miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2250 5' -50.6 NC_001405.1 + 9472 0.66 0.84721
Target:  5'- --gGCGACGGCgcauggucucGGUGACG-GCGcGGCCg -3'
miRNA:   3'- caaUGUUGUCG----------CCGUUGCaCGU-CUGG- -5'
2250 5' -50.6 NC_001405.1 + 15362 0.66 0.837885
Target:  5'- -aUACAACuaCGGCGACccuCAGACCg -3'
miRNA:   3'- caAUGUUGucGCCGUUGcacGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 28767 0.66 0.828311
Target:  5'- -gUGCAGCAgGCGGCAACccuaAGGCa -3'
miRNA:   3'- caAUGUUGU-CGCCGUUGcacgUCUGg -5'
2250 5' -50.6 NC_001405.1 + 9731 0.66 0.828311
Target:  5'- --gGCG--GGCGGCAGCG-GguGGCg -3'
miRNA:   3'- caaUGUugUCGCCGUUGCaCguCUGg -5'
2250 5' -50.6 NC_001405.1 + 34856 0.66 0.808466
Target:  5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3'
miRNA:   3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16213 0.67 0.799252
Target:  5'- --cGCGGCGGCGGCccugcuuaaccgcgcACGUcGCAccGGCCg -3'
miRNA:   3'- caaUGUUGUCGCCGu--------------UGCA-CGU--CUGG- -5'
2250 5' -50.6 NC_001405.1 + 18629 0.67 0.798219
Target:  5'- gGUUACAACAaCGGCgGACGgcccugGCAGcACa -3'
miRNA:   3'- -CAAUGUUGUcGCCG-UUGCa-----CGUC-UGg -5'
2250 5' -50.6 NC_001405.1 + 25872 0.67 0.787772
Target:  5'- ----aAGCAGuuGCGAauUGCAGACCa -3'
miRNA:   3'- caaugUUGUCgcCGUUgcACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 17737 0.67 0.755374
Target:  5'- --cACGGCcugacgGGCGGCAugcguCGUGCGcACCa -3'
miRNA:   3'- caaUGUUG------UCGCCGUu----GCACGUcUGG- -5'
2250 5' -50.6 NC_001405.1 + 16486 0.68 0.744267
Target:  5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3'
miRNA:   3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 24922 0.68 0.73303
Target:  5'- ---uCAugAGCGagcugaucguGCGcCGUGCAGACCc -3'
miRNA:   3'- caauGUugUCGC----------CGUuGCACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16378 0.68 0.73303
Target:  5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3'
miRNA:   3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 6535 0.68 0.721677
Target:  5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3'
miRNA:   3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16373 0.68 0.698679
Target:  5'- -----cGCAGgGGCAACGUGUacugGGugCg -3'
miRNA:   3'- caauguUGUCgCCGUUGCACG----UCugG- -5'
2250 5' -50.6 NC_001405.1 + 12207 0.68 0.698679
Target:  5'- --gGCAACGuCGGCGGCGUGgAGGa- -3'
miRNA:   3'- caaUGUUGUcGCCGUUGCACgUCUgg -5'
2250 5' -50.6 NC_001405.1 + 15770 0.69 0.687062
Target:  5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5'
2250 5' -50.6 NC_001405.1 + 11133 0.69 0.687062
Target:  5'- aGggGCAACAuccGCGGCugacGCGgcgGCAGAUg -3'
miRNA:   3'- -CaaUGUUGU---CGCCGu---UGCa--CGUCUGg -5'
2250 5' -50.6 NC_001405.1 + 16496 0.69 0.687062
Target:  5'- ---cCAGCGGCGGCGGCGcGCA-ACg -3'
miRNA:   3'- caauGUUGUCGCCGUUGCaCGUcUGg -5'
2250 5' -50.6 NC_001405.1 + 9980 0.69 0.651903
Target:  5'- uUUGCAucuaucgcuACGGCGGCGGCGgaGUuuGGCCg -3'
miRNA:   3'- cAAUGU---------UGUCGCCGUUGCa-CGu-CUGG- -5'
2250 5' -50.6 NC_001405.1 + 15104 0.69 0.651903
Target:  5'- --gGCAGCcGCGGCAA--UGCAG-CCg -3'
miRNA:   3'- caaUGUUGuCGCCGUUgcACGUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.