Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2253 | 5' | -60.4 | NC_001405.1 | + | 13714 | 1.05 | 0.000298 |
Target: 5'- uUUACCAGCACUCGCACCACCCGCCCGc -3' miRNA: 3'- -AAUGGUCGUGAGCGUGGUGGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 12247 | 0.74 | 0.083081 |
Target: 5'- gUUGCCAGCGCgCGCggguGCCACCgccaGCCCa -3' miRNA: 3'- -AAUGGUCGUGaGCG----UGGUGGg---CGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 12085 | 0.73 | 0.104238 |
Target: 5'- -cAUCAGCucgcggucgcugaGCUCGCGCCGCCgGCUCa -3' miRNA: 3'- aaUGGUCG-------------UGAGCGUGGUGGgCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 6695 | 0.72 | 0.12049 |
Target: 5'- aUACgAGCg--CGCGCUugCCGCCCGc -3' miRNA: 3'- aAUGgUCGugaGCGUGGugGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 12383 | 0.71 | 0.138685 |
Target: 5'- -gGCUGGCuCUgcaGCGCCGCCCGCaCCGc -3' miRNA: 3'- aaUGGUCGuGAg--CGUGGUGGGCG-GGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 23904 | 0.71 | 0.142615 |
Target: 5'- -cGCUGGUGC-CGCGCaCACCCaGCCCGc -3' miRNA: 3'- aaUGGUCGUGaGCGUG-GUGGG-CGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 8726 | 0.71 | 0.146646 |
Target: 5'- -cGCCAGCAacCUCcgcgcgcaGCACCAgcuCCUGCCCGc -3' miRNA: 3'- aaUGGUCGU--GAG--------CGUGGU---GGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 16412 | 0.71 | 0.131123 |
Target: 5'- -gGCCuGCGCgugccCGUGCgCACCCGCCCc -3' miRNA: 3'- aaUGGuCGUGa----GCGUG-GUGGGCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 9789 | 0.7 | 0.155022 |
Target: 5'- -gACCGcCACcCGCuGCCGCCCGCCaCGg -3' miRNA: 3'- aaUGGUcGUGaGCG-UGGUGGGCGG-GC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 15103 | 0.7 | 0.155022 |
Target: 5'- gUUGCCGcCGCcUGCGCCAucCCCGCCCu -3' miRNA: 3'- -AAUGGUcGUGaGCGUGGU--GGGCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 10830 | 0.7 | 0.15937 |
Target: 5'- -aGCUAGCGCa-GCAgCCGCCgCGCCUGg -3' miRNA: 3'- aaUGGUCGUGagCGU-GGUGG-GCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 22782 | 0.7 | 0.168398 |
Target: 5'- -gGCCAGCG--UGCACCACCCgGCgCUGa -3' miRNA: 3'- aaUGGUCGUgaGCGUGGUGGG-CG-GGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 33280 | 0.69 | 0.192996 |
Target: 5'- --cUCAGCgaugAUUCGCACCGCCCGCa-- -3' miRNA: 3'- aauGGUCG----UGAGCGUGGUGGGCGggc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 22263 | 0.69 | 0.191435 |
Target: 5'- -aACCAGgaacaGCUCuacagcuuccuggaGCGCCACUCGCCCu -3' miRNA: 3'- aaUGGUCg----UGAG--------------CGUGGUGGGCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 13453 | 0.69 | 0.187836 |
Target: 5'- -aACCcGCACUgGCuACCGCCC-CCUGg -3' miRNA: 3'- aaUGGuCGUGAgCG-UGGUGGGcGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 4765 | 0.69 | 0.182799 |
Target: 5'- aUACC-GCAguCUgGCACCcUCCGCCCGc -3' miRNA: 3'- aAUGGuCGU--GAgCGUGGuGGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 14243 | 0.68 | 0.245214 |
Target: 5'- -cACUGGCGC-CGCGCuCACCaCGCUCu -3' miRNA: 3'- aaUGGUCGUGaGCGUG-GUGG-GCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 15770 | 0.68 | 0.243298 |
Target: 5'- -cGCCAGaCGC-CGCACCugCCccuacguuuacaagGCCCu -3' miRNA: 3'- aaUGGUC-GUGaGCGUGGugGG--------------CGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 3690 | 0.68 | 0.220685 |
Target: 5'- --uCCAGCAUugauggUCGCcCCGuCCUGCCCGc -3' miRNA: 3'- aauGGUCGUG------AGCGuGGU-GGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 24383 | 0.67 | 0.279007 |
Target: 5'- -cGCCAuGCcUUUGguCCcCCCGCCCGa -3' miRNA: 3'- aaUGGU-CGuGAGCguGGuGGGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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