miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22534 3' -46 NC_005083.1 + 29412 0.66 0.999998
Target:  5'- uUCCCAGAUGcuguCGA-GCAcguACACAAAa -3'
miRNA:   3'- uAGGGUCUAUu---GUUgCGU---UGUGUUUg -5'
22534 3' -46 NC_005083.1 + 73278 0.66 0.999998
Target:  5'- -cUUCAGAUAGaucACGCGACGCGAuuGCu -3'
miRNA:   3'- uaGGGUCUAUUgu-UGCGUUGUGUU--UG- -5'
22534 3' -46 NC_005083.1 + 45739 0.66 0.999997
Target:  5'- uUUgUAGGU--CGugGCAACGCGAACa -3'
miRNA:   3'- uAGgGUCUAuuGUugCGUUGUGUUUG- -5'
22534 3' -46 NC_005083.1 + 66088 0.66 0.999995
Target:  5'- uAUCUCAGc--AUAACGCAGCaacugACGAACg -3'
miRNA:   3'- -UAGGGUCuauUGUUGCGUUG-----UGUUUG- -5'
22534 3' -46 NC_005083.1 + 200626 0.66 0.999994
Target:  5'- --gCCAGAga--AGCGCGACGCAGu- -3'
miRNA:   3'- uagGGUCUauugUUGCGUUGUGUUug -5'
22534 3' -46 NC_005083.1 + 25022 0.67 0.999991
Target:  5'- aAUCCC-GAUGAUuaAGCGUAAgCACAAAa -3'
miRNA:   3'- -UAGGGuCUAUUG--UUGCGUU-GUGUUUg -5'
22534 3' -46 NC_005083.1 + 167640 0.67 0.999982
Target:  5'- aAUCCgCAGcacACGACGCAGCA-AAGCa -3'
miRNA:   3'- -UAGG-GUCuauUGUUGCGUUGUgUUUG- -5'
22534 3' -46 NC_005083.1 + 47937 0.68 0.999955
Target:  5'- -gCUgAGAaAGCAGCGCAGaACGAACa -3'
miRNA:   3'- uaGGgUCUaUUGUUGCGUUgUGUUUG- -5'
22534 3' -46 NC_005083.1 + 125011 0.68 0.999955
Target:  5'- -aCCCAGA--ACAgcuuguuuacACGCugaAGCACAAACg -3'
miRNA:   3'- uaGGGUCUauUGU----------UGCG---UUGUGUUUG- -5'
22534 3' -46 NC_005083.1 + 157960 0.68 0.999955
Target:  5'- -gCgCAGAUAAauucaAAUGCGACugGAACa -3'
miRNA:   3'- uaGgGUCUAUUg----UUGCGUUGugUUUG- -5'
22534 3' -46 NC_005083.1 + 215345 0.68 0.999955
Target:  5'- -gUCCGGGUGcaGCGGCaGCGGCAgAAACu -3'
miRNA:   3'- uaGGGUCUAU--UGUUG-CGUUGUgUUUG- -5'
22534 3' -46 NC_005083.1 + 35528 0.68 0.99994
Target:  5'- cUUCCAGAUAGCAcCGUGACcACGuuCg -3'
miRNA:   3'- uAGGGUCUAUUGUuGCGUUG-UGUuuG- -5'
22534 3' -46 NC_005083.1 + 26547 0.68 0.99994
Target:  5'- -gCCUAGugaaAGCAACGCGACAUAu-- -3'
miRNA:   3'- uaGGGUCua--UUGUUGCGUUGUGUuug -5'
22534 3' -46 NC_005083.1 + 41719 0.68 0.99992
Target:  5'- aAUCCUGGGU--CAugGCAAgAUAAGCg -3'
miRNA:   3'- -UAGGGUCUAuuGUugCGUUgUGUUUG- -5'
22534 3' -46 NC_005083.1 + 116167 0.68 0.999918
Target:  5'- uUCCCAGAUAcugacguuguaGCAguugucuuugauaACGCAcuacCGCAAGCa -3'
miRNA:   3'- uAGGGUCUAU-----------UGU-------------UGCGUu---GUGUUUG- -5'
22534 3' -46 NC_005083.1 + 179928 0.68 0.999892
Target:  5'- gGUCCCAGugauucgGUAcCAACGCAGguUGCGAACc -3'
miRNA:   3'- -UAGGGUC-------UAUuGUUGCGUU--GUGUUUG- -5'
22534 3' -46 NC_005083.1 + 41125 0.69 0.999823
Target:  5'- -aCCCAGAaauGCAACGUGAagucuGCAAACu -3'
miRNA:   3'- uaGGGUCUau-UGUUGCGUUg----UGUUUG- -5'
22534 3' -46 NC_005083.1 + 118511 0.7 0.999537
Target:  5'- --aCUAGcaGACAACGCAACACuuACu -3'
miRNA:   3'- uagGGUCuaUUGUUGCGUUGUGuuUG- -5'
22534 3' -46 NC_005083.1 + 148240 0.7 0.999422
Target:  5'- uUCUCAGAuUAGCAAC--AGCACGAACg -3'
miRNA:   3'- uAGGGUCU-AUUGUUGcgUUGUGUUUG- -5'
22534 3' -46 NC_005083.1 + 179487 0.7 0.999422
Target:  5'- -aCCCAGAUAAgGuCGaaUAACACGAACu -3'
miRNA:   3'- uaGGGUCUAUUgUuGC--GUUGUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.