Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22534 | 3' | -46 | NC_005083.1 | + | 27155 | 0.71 | 0.998064 |
Target: 5'- -aUCUAGAUGA--GCGCAuuGCACAAGCa -3' miRNA: 3'- uaGGGUCUAUUguUGCGU--UGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 197983 | 0.72 | 0.997232 |
Target: 5'- -aCCCAGAgacUGGCuugccaacuGGCGCAuACACAGACa -3' miRNA: 3'- uaGGGUCU---AUUG---------UUGCGU-UGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 208728 | 0.73 | 0.994671 |
Target: 5'- -aCCCAGGUGcugugcgucuaGCGACGaacGCGCAAGCa -3' miRNA: 3'- uaGGGUCUAU-----------UGUUGCgu-UGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 202171 | 0.73 | 0.993797 |
Target: 5'- cAUCCCAGA-AACAGacccgaaCAACACAAACa -3' miRNA: 3'- -UAGGGUCUaUUGUUgc-----GUUGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 149862 | 0.74 | 0.985323 |
Target: 5'- cAUCCCgcuugcaaaagaaaAGGUAACAGaCGC-ACACAAACa -3' miRNA: 3'- -UAGGG--------------UCUAUUGUU-GCGuUGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 190157 | 0.75 | 0.974662 |
Target: 5'- aGUUUCAGAUGuuGACGCGACACGAuACa -3' miRNA: 3'- -UAGGGUCUAUugUUGCGUUGUGUU-UG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 233407 | 0.76 | 0.96873 |
Target: 5'- cAUCCCAaaacgAGCGACGCcACGCAAGCc -3' miRNA: 3'- -UAGGGUcua--UUGUUGCGuUGUGUUUG- -5' |
|||||||
22534 | 3' | -46 | NC_005083.1 | + | 184665 | 1.1 | 0.032395 |
Target: 5'- cAUCCCAGAUAACAACGCAACACAAACg -3' miRNA: 3'- -UAGGGUCUAUUGUUGCGUUGUGUUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home