miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22544 3' -49.6 NC_005083.1 + 217432 0.66 0.999813
Target:  5'- gGGCGaGugGCGGAA-GACGugGUcuuGGUc -3'
miRNA:   3'- -CCGUaCugUGUCUUuCUGUugCG---CCG- -5'
22544 3' -49.6 NC_005083.1 + 113018 0.66 0.999763
Target:  5'- aGCGUGGuaagucguuuCACGGcAAAGuaaGGCGCGGUg -3'
miRNA:   3'- cCGUACU----------GUGUC-UUUCug-UUGCGCCG- -5'
22544 3' -49.6 NC_005083.1 + 120986 0.66 0.999763
Target:  5'- gGGUauAUGGgGCGGAAuAGACAaaggcuuuguAUGCGGUc -3'
miRNA:   3'- -CCG--UACUgUGUCUU-UCUGU----------UGCGCCG- -5'
22544 3' -49.6 NC_005083.1 + 85672 0.66 0.999701
Target:  5'- --gGUGGCAUAGGGAGAauaAACG-GGUa -3'
miRNA:   3'- ccgUACUGUGUCUUUCUg--UUGCgCCG- -5'
22544 3' -49.6 NC_005083.1 + 186490 0.66 0.999534
Target:  5'- aGGCgGUGGCGCAGcaAAAGAaucuguuuCAGCGCGu- -3'
miRNA:   3'- -CCG-UACUGUGUC--UUUCU--------GUUGCGCcg -5'
22544 3' -49.6 NC_005083.1 + 201689 0.67 0.999424
Target:  5'- aGGauacUGACuACAGAcugaAAGACAACGUaGGUa -3'
miRNA:   3'- -CCgu--ACUG-UGUCU----UUCUGUUGCG-CCG- -5'
22544 3' -49.6 NC_005083.1 + 120121 0.67 0.999292
Target:  5'- aGUAUGuCAUAGAGAuACGACaaGGCa -3'
miRNA:   3'- cCGUACuGUGUCUUUcUGUUGcgCCG- -5'
22544 3' -49.6 NC_005083.1 + 211046 0.67 0.999152
Target:  5'- gGGCuacUGACGCAGAGAcuGGCAcagugucguacagaGUGGCa -3'
miRNA:   3'- -CCGu--ACUGUGUCUUU--CUGUug------------CGCCG- -5'
22544 3' -49.6 NC_005083.1 + 118708 0.67 0.999135
Target:  5'- aGGCAUGGCuguagcuCGGcuAGGCGcagauguaGCGGCu -3'
miRNA:   3'- -CCGUACUGu------GUCuuUCUGUug------CGCCG- -5'
22544 3' -49.6 NC_005083.1 + 90349 0.67 0.999118
Target:  5'- aGCAUuaGGCGCGGAucGACuuGCGCaagauugGGCg -3'
miRNA:   3'- cCGUA--CUGUGUCUuuCUGu-UGCG-------CCG- -5'
22544 3' -49.6 NC_005083.1 + 185233 0.68 0.998471
Target:  5'- uGC-UGGCGCAGAcaucgAAGGCAAC-CGaGCg -3'
miRNA:   3'- cCGuACUGUGUCU-----UUCUGUUGcGC-CG- -5'
22544 3' -49.6 NC_005083.1 + 94636 0.68 0.997821
Target:  5'- cGCuugGUGAuUACGcGAAAGACGACGUuuGGCa -3'
miRNA:   3'- cCG---UACU-GUGU-CUUUCUGUUGCG--CCG- -5'
22544 3' -49.6 NC_005083.1 + 173378 0.68 0.996955
Target:  5'- -uCAUGACACugAGAAAGAagcCAACGC-GCa -3'
miRNA:   3'- ccGUACUGUG--UCUUUCU---GUUGCGcCG- -5'
22544 3' -49.6 NC_005083.1 + 105834 0.69 0.996425
Target:  5'- cGGCAUGACACAu-----CAAUGCaGCa -3'
miRNA:   3'- -CCGUACUGUGUcuuucuGUUGCGcCG- -5'
22544 3' -49.6 NC_005083.1 + 203136 0.69 0.994365
Target:  5'- aGUAUGACAuugacacguCAGcacuAGGCGGCGgGGCa -3'
miRNA:   3'- cCGUACUGU---------GUCuu--UCUGUUGCgCCG- -5'
22544 3' -49.6 NC_005083.1 + 21393 0.7 0.992523
Target:  5'- uGCAUGGC-CAGGuuauGAGuCAGCGCaGCu -3'
miRNA:   3'- cCGUACUGuGUCU----UUCuGUUGCGcCG- -5'
22544 3' -49.6 NC_005083.1 + 129915 0.7 0.991886
Target:  5'- aGGCGUGGCaaaucaccacauccaACaAGAGcuACAGCaGCGGCa -3'
miRNA:   3'- -CCGUACUG---------------UG-UCUUucUGUUG-CGCCG- -5'
22544 3' -49.6 NC_005083.1 + 201400 0.7 0.991438
Target:  5'- aGGCGUGACaaucACAGAAu-ACAACGacuacuGGCg -3'
miRNA:   3'- -CCGUACUG----UGUCUUucUGUUGCg-----CCG- -5'
22544 3' -49.6 NC_005083.1 + 217100 0.7 0.988896
Target:  5'- aGGUAUcGACGuuguGAAAGACAGCGaCGGg -3'
miRNA:   3'- -CCGUA-CUGUgu--CUUUCUGUUGC-GCCg -5'
22544 3' -49.6 NC_005083.1 + 50788 0.72 0.975213
Target:  5'- cGGUAUGcaguauCGCA--AAGACGuACGCGGCg -3'
miRNA:   3'- -CCGUACu-----GUGUcuUUCUGU-UGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.