miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22553 5' -55.2 NC_005091.1 + 1368 1.05 0.001834
Target:  5'- cUUGCCGCACGUCGCGAAGAACACCUGc -3'
miRNA:   3'- -AACGGCGUGCAGCGCUUCUUGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 2019 0.67 0.668094
Target:  5'- -gGCCGCAuCGUCGCGuucGAucuucuCGCCg- -3'
miRNA:   3'- aaCGGCGU-GCAGCGCuu-CUu-----GUGGac -5'
22553 5' -55.2 NC_005091.1 + 6871 0.66 0.701031
Target:  5'- -aGCUGCGCGUCGgucauCGGAuuuucguccacGAACACCg- -3'
miRNA:   3'- aaCGGCGUGCAGC-----GCUU-----------CUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 6950 0.66 0.690105
Target:  5'- -cGCUGCGCGUgCGaCGGAGAcaGCCa- -3'
miRNA:   3'- aaCGGCGUGCA-GC-GCUUCUugUGGac -5'
22553 5' -55.2 NC_005091.1 + 7996 0.67 0.668094
Target:  5'- gUGCCGUACGaacgugugCGCGAGGGGaucgaggucgGCCUGc -3'
miRNA:   3'- aACGGCGUGCa-------GCGCUUCUUg---------UGGAC- -5'
22553 5' -55.2 NC_005091.1 + 14474 0.69 0.546763
Target:  5'- -cGCCGUAgCGaUCGUGAcAGGGCugCUGa -3'
miRNA:   3'- aaCGGCGU-GC-AGCGCU-UCUUGugGAC- -5'
22553 5' -55.2 NC_005091.1 + 17067 0.69 0.543518
Target:  5'- -cGCUGCGCGUgcucucgaccucggCGCGAAGuguAGCACcCUGa -3'
miRNA:   3'- aaCGGCGUGCA--------------GCGCUUC---UUGUG-GAC- -5'
22553 5' -55.2 NC_005091.1 + 20384 0.67 0.668094
Target:  5'- -aGUaCGUACGUUGCGAcGAACAUCg- -3'
miRNA:   3'- aaCG-GCGUGCAGCGCUuCUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 21307 0.67 0.65703
Target:  5'- -cGCCGcCGCGUaCGCGAGGc-CGCCc- -3'
miRNA:   3'- aaCGGC-GUGCA-GCGCUUCuuGUGGac -5'
22553 5' -55.2 NC_005091.1 + 22224 0.69 0.546763
Target:  5'- cUGCUGCGCGUagaGCu--GGAUACCUGc -3'
miRNA:   3'- aACGGCGUGCAg--CGcuuCUUGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 25186 0.66 0.722668
Target:  5'- -aGCCgGCGCGUCGaUGgcGAcCGCCUc -3'
miRNA:   3'- aaCGG-CGUGCAGC-GCuuCUuGUGGAc -5'
22553 5' -55.2 NC_005091.1 + 25695 0.67 0.634845
Target:  5'- -cGCCGCauucGCGcuuuUCGCGAAGGGCAUg-- -3'
miRNA:   3'- aaCGGCG----UGC----AGCGCUUCUUGUGgac -5'
22553 5' -55.2 NC_005091.1 + 25836 0.67 0.65703
Target:  5'- cUUGCCGUACGaCGCGGcgAGAuCAUCa- -3'
miRNA:   3'- -AACGGCGUGCaGCGCU--UCUuGUGGac -5'
22553 5' -55.2 NC_005091.1 + 26774 0.67 0.645944
Target:  5'- -cGCCGCACcggcUCGCGucuu-CGCCUGa -3'
miRNA:   3'- aaCGGCGUGc---AGCGCuucuuGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 28339 0.67 0.623744
Target:  5'- -cGCCaGCGCGUCGCcGGuuGCACCg- -3'
miRNA:   3'- aaCGG-CGUGCAGCGcUUcuUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 30443 0.67 0.645944
Target:  5'- aUGCCgaaGCGCGUUcCGAAGcACACCg- -3'
miRNA:   3'- aACGG---CGUGCAGcGCUUCuUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 31700 0.7 0.442998
Target:  5'- -cGCCGCcgauACGUU-CGAAGAACGCCa- -3'
miRNA:   3'- aaCGGCG----UGCAGcGCUUCUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 33506 0.68 0.568537
Target:  5'- -cGCaGCGCGcUCGCGAGGAcGC-CCUGc -3'
miRNA:   3'- aaCGgCGUGC-AGCGCUUCU-UGuGGAC- -5'
22553 5' -55.2 NC_005091.1 + 34192 0.71 0.42742
Target:  5'- aUGCCGCGCGacugauccgguucgCGCGGuucgaggauguGGAugACCUGa -3'
miRNA:   3'- aACGGCGUGCa-------------GCGCU-----------UCUugUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 37874 0.66 0.71189
Target:  5'- -gGCUGCGCGcgUGCGGGaAGCGCCa- -3'
miRNA:   3'- aaCGGCGUGCa-GCGCUUcUUGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.