Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22553 | 5' | -55.2 | NC_005091.1 | + | 45252 | 0.72 | 0.342871 |
Target: 5'- -gGCCGCGCGUUGCGcccGGAAC-UCUGc -3' miRNA: 3'- aaCGGCGUGCAGCGCu--UCUUGuGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 46111 | 0.66 | 0.71189 |
Target: 5'- -aGCUGCACGccaaacuccugcUCGUGccGGACGCCg- -3' miRNA: 3'- aaCGGCGUGC------------AGCGCuuCUUGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 45712 | 0.66 | 0.701031 |
Target: 5'- -gGCCGCGCGcCGCGccGGcuACugCUc -3' miRNA: 3'- aaCGGCGUGCaGCGCuuCU--UGugGAc -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 7996 | 0.67 | 0.668094 |
Target: 5'- gUGCCGUACGaacgugugCGCGAGGGGaucgaggucgGCCUGc -3' miRNA: 3'- aACGGCGUGCa-------GCGCUUCUUg---------UGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 21307 | 0.67 | 0.65703 |
Target: 5'- -cGCCGcCGCGUaCGCGAGGc-CGCCc- -3' miRNA: 3'- aaCGGC-GUGCA-GCGCUUCuuGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 25836 | 0.67 | 0.65703 |
Target: 5'- cUUGCCGUACGaCGCGGcgAGAuCAUCa- -3' miRNA: 3'- -AACGGCGUGCaGCGCU--UCUuGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 50590 | 0.67 | 0.645944 |
Target: 5'- -aGUCGCgcaacaGCGUCGCGuuauAGAcguCGCCUGu -3' miRNA: 3'- aaCGGCG------UGCAGCGCu---UCUu--GUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 26774 | 0.67 | 0.645944 |
Target: 5'- -cGCCGCACcggcUCGCGucuu-CGCCUGa -3' miRNA: 3'- aaCGGCGUGc---AGCGCuucuuGUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 38887 | 0.67 | 0.645944 |
Target: 5'- -aGCCG-GCGUCGCGGugAGAagaugcagGCGCUUGa -3' miRNA: 3'- aaCGGCgUGCAGCGCU--UCU--------UGUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 34192 | 0.71 | 0.42742 |
Target: 5'- aUGCCGCGCGacugauccgguucgCGCGGuucgaggauguGGAugACCUGa -3' miRNA: 3'- aACGGCGUGCa-------------GCGCU-----------UCUugUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 43879 | 0.7 | 0.483288 |
Target: 5'- -aGUCGCaACGcCGCGAAGAccugaACACCa- -3' miRNA: 3'- aaCGGCG-UGCaGCGCUUCU-----UGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 17067 | 0.69 | 0.543518 |
Target: 5'- -cGCUGCGCGUgcucucgaccucggCGCGAAGuguAGCACcCUGa -3' miRNA: 3'- aaCGGCGUGCA--------------GCGCUUC---UUGUG-GAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 22224 | 0.69 | 0.546763 |
Target: 5'- cUGCUGCGCGUagaGCu--GGAUACCUGc -3' miRNA: 3'- aACGGCGUGCAg--CGcuuCUUGUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 14474 | 0.69 | 0.546763 |
Target: 5'- -cGCCGUAgCGaUCGUGAcAGGGCugCUGa -3' miRNA: 3'- aaCGGCGU-GC-AGCGCU-UCUUGugGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 51576 | 0.68 | 0.601573 |
Target: 5'- gUGUCGUGCGUCGCGugacGGGCGCg-- -3' miRNA: 3'- aACGGCGUGCAGCGCuu--CUUGUGgac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 1368 | 1.05 | 0.001834 |
Target: 5'- cUUGCCGCACGUCGCGAAGAACACCUGc -3' miRNA: 3'- -AACGGCGUGCAGCGCUUCUUGUGGAC- -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 37874 | 0.66 | 0.71189 |
Target: 5'- -gGCUGCGCGcgUGCGGGaAGCGCCa- -3' miRNA: 3'- aaCGGCGUGCa-GCGCUUcUUGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 53539 | 0.66 | 0.71189 |
Target: 5'- cUUGCCGCACGggCGCGGcuuucuggcgGGAugGUCUa -3' miRNA: 3'- -AACGGCGUGCa-GCGCU----------UCUugUGGAc -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 6871 | 0.66 | 0.701031 |
Target: 5'- -aGCUGCGCGUCGgucauCGGAuuuucguccacGAACACCg- -3' miRNA: 3'- aaCGGCGUGCAGC-----GCUU-----------CUUGUGGac -5' |
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22553 | 5' | -55.2 | NC_005091.1 | + | 6950 | 0.66 | 0.690105 |
Target: 5'- -cGCUGCGCGUgCGaCGGAGAcaGCCa- -3' miRNA: 3'- aaCGGCGUGCA-GC-GCUUCUugUGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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