miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22555 3' -57.8 NC_005091.1 + 28078 0.66 0.653177
Target:  5'- aCCUaCGaUCAGgu-CGUgUCGGCCGGCGa -3'
miRNA:   3'- -GGA-GC-GGUCaagGCGaAGCCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 12195 0.66 0.653177
Target:  5'- gCUCGCCGugccGUUCCGCaUCaucaagcaGGcCCGGCu -3'
miRNA:   3'- gGAGCGGU----CAAGGCGaAG--------CC-GGCUGc -5'
22555 3' -57.8 NC_005091.1 + 50288 0.66 0.631919
Target:  5'- gUCUCaGCCAucgUCgGCUcgCGGCCGAUc -3'
miRNA:   3'- -GGAG-CGGUca-AGgCGAa-GCCGGCUGc -5'
22555 3' -57.8 NC_005091.1 + 50385 0.66 0.621286
Target:  5'- aCCU-GCCGGgugaUCgGCcgCGaGCCGACGa -3'
miRNA:   3'- -GGAgCGGUCa---AGgCGaaGC-CGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 31707 0.66 0.610661
Target:  5'- gCCgCGCCGG--CCGcCUUCGGCUG-CGc -3'
miRNA:   3'- -GGaGCGGUCaaGGC-GAAGCCGGCuGC- -5'
22555 3' -57.8 NC_005091.1 + 25807 0.66 0.610661
Target:  5'- --gCGCCGG--CUGCcUUGGCCGACa -3'
miRNA:   3'- ggaGCGGUCaaGGCGaAGCCGGCUGc -5'
22555 3' -57.8 NC_005091.1 + 9283 0.66 0.610661
Target:  5'- gCUCGCCGcuggCCGCcgacCGGCUGGCc -3'
miRNA:   3'- gGAGCGGUcaa-GGCGaa--GCCGGCUGc -5'
22555 3' -57.8 NC_005091.1 + 43164 0.67 0.589472
Target:  5'- aCUCGCgacgagCAGUucuUCUGCUUUcgcggGGCUGACGa -3'
miRNA:   3'- gGAGCG------GUCA---AGGCGAAG-----CCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 49602 0.67 0.589472
Target:  5'- -aUUGUCGGUUCCGU---GGCUGGCGc -3'
miRNA:   3'- ggAGCGGUCAAGGCGaagCCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 22835 0.67 0.578924
Target:  5'- aCgCGCCuGaacgCCGCgcugaCGGCCGGCGg -3'
miRNA:   3'- gGaGCGGuCaa--GGCGaa---GCCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 7225 0.67 0.557958
Target:  5'- uCCUUgGCCGGggcgUCC---UCGGCCGGCa -3'
miRNA:   3'- -GGAG-CGGUCa---AGGcgaAGCCGGCUGc -5'
22555 3' -57.8 NC_005091.1 + 26687 0.68 0.506624
Target:  5'- gCUUGCUg---CUGCggCGGCCGGCGg -3'
miRNA:   3'- gGAGCGGucaaGGCGaaGCCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 14463 0.69 0.476802
Target:  5'- uCCUCGUCGGcugUCCGggUCaGGCgGGCa -3'
miRNA:   3'- -GGAGCGGUCa--AGGCgaAG-CCGgCUGc -5'
22555 3' -57.8 NC_005091.1 + 53152 0.69 0.476802
Target:  5'- gUCUCGCguGaUUCCGCUguagCGcGCgGGCGc -3'
miRNA:   3'- -GGAGCGguC-AAGGCGAa---GC-CGgCUGC- -5'
22555 3' -57.8 NC_005091.1 + 46534 0.69 0.467054
Target:  5'- gCUCGCCccUUCCGCUcaacgcugcUCGGCaGAUGa -3'
miRNA:   3'- gGAGCGGucAAGGCGA---------AGCCGgCUGC- -5'
22555 3' -57.8 NC_005091.1 + 45788 0.69 0.447875
Target:  5'- ---aGCCGGcgCgGCgcgCGGCCGACGc -3'
miRNA:   3'- ggagCGGUCaaGgCGaa-GCCGGCUGC- -5'
22555 3' -57.8 NC_005091.1 + 17838 0.7 0.375834
Target:  5'- --gCGCCAcggcgacaaacGUUCCGCUaUCGGCCGGg- -3'
miRNA:   3'- ggaGCGGU-----------CAAGGCGA-AGCCGGCUgc -5'
22555 3' -57.8 NC_005091.1 + 11013 0.71 0.359086
Target:  5'- gCUUCGCCGGggUCGCUUugcCGGgCGGCu -3'
miRNA:   3'- -GGAGCGGUCaaGGCGAA---GCCgGCUGc -5'
22555 3' -57.8 NC_005091.1 + 17964 0.71 0.342867
Target:  5'- gUUCGCCAGUUgUCGC--CGGCCGAUc -3'
miRNA:   3'- gGAGCGGUCAA-GGCGaaGCCGGCUGc -5'
22555 3' -57.8 NC_005091.1 + 11415 0.71 0.334957
Target:  5'- gCCU-GCCccuGUUUCGCggcggccacgUCGGCCGACGc -3'
miRNA:   3'- -GGAgCGGu--CAAGGCGa---------AGCCGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.