Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22556 | 5' | -56.3 | NC_005091.1 | + | 637 | 0.68 | 0.541873 |
Target: 5'- aUCgCGCuGAACgCGGAGaauCGACCGG-GCa -3' miRNA: 3'- -AG-GCGuCUUG-GCCUCg--GUUGGUCaCG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 2684 | 1.13 | 0.000445 |
Target: 5'- aUCCGCAGAACCGGAGCCAACCAGUGCg -3' miRNA: 3'- -AGGCGUCUUGGCCUCGGUUGGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 4667 | 0.74 | 0.241624 |
Target: 5'- cUCCGCGcgucguuuuGGGCCGGGGCCGucGCUGGUaGCu -3' miRNA: 3'- -AGGCGU---------CUUGGCCUCGGU--UGGUCA-CG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 8668 | 0.71 | 0.384781 |
Target: 5'- -gCGCAGAcauCCGGGGCaCGcuguUCAGUGCa -3' miRNA: 3'- agGCGUCUu--GGCCUCG-GUu---GGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 10046 | 0.77 | 0.171026 |
Target: 5'- aCCGgAcgaggaucGAGCCGGGGCCGuaauacuGCCGGUGCu -3' miRNA: 3'- aGGCgU--------CUUGGCCUCGGU-------UGGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 12197 | 0.67 | 0.594508 |
Target: 5'- gUCCGgcauCAGGACCcacacauGGAGCaggguauCCGGUGCg -3' miRNA: 3'- -AGGC----GUCUUGG-------CCUCGguu----GGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 12349 | 0.67 | 0.595593 |
Target: 5'- --aGCGGcuauacaaaaaGACCGcgacGAGCgCGGCCAGUGCg -3' miRNA: 3'- aggCGUC-----------UUGGC----CUCG-GUUGGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 15689 | 0.67 | 0.632614 |
Target: 5'- cUCCGCuu-GCCGGuGCUGagauuuuccucggguACCAGUGg -3' miRNA: 3'- -AGGCGucuUGGCCuCGGU---------------UGGUCACg -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 16408 | 0.69 | 0.478724 |
Target: 5'- gCgGCGGGAuuCCGGAcgcaccgaacaacGCCAACCAGUacacGCg -3' miRNA: 3'- aGgCGUCUU--GGCCU-------------CGGUUGGUCA----CG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 18383 | 0.66 | 0.671797 |
Target: 5'- -gCGCAGAACguCGGAaacauGCgAGCCgugGGUGCg -3' miRNA: 3'- agGCGUCUUG--GCCU-----CGgUUGG---UCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 23955 | 0.67 | 0.592338 |
Target: 5'- gCCGCAGAuGCCGG-GCCAguggcugaaucguuGCCGacGCg -3' miRNA: 3'- aGGCGUCU-UGGCCuCGGU--------------UGGUcaCG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 24943 | 0.66 | 0.671797 |
Target: 5'- cUCGUAGAcgauucggccGCCGcaguGCCGACCAGUcucGCa -3' miRNA: 3'- aGGCGUCU----------UGGCcu--CGGUUGGUCA---CG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 25208 | 0.7 | 0.421279 |
Target: 5'- gCCGCuGcACCGGGGUCGaugcaGCCGGcGCg -3' miRNA: 3'- aGGCGuCuUGGCCUCGGU-----UGGUCaCG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 26434 | 0.7 | 0.449983 |
Target: 5'- -gCGCGGGccGCCGGGGCUgccaucguagcGGCCGG-GCg -3' miRNA: 3'- agGCGUCU--UGGCCUCGG-----------UUGGUCaCG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 28690 | 0.67 | 0.61735 |
Target: 5'- uUCUGCGGGcgcacgacacacGCCGGGGCCugcgcgcauGCCAGc-- -3' miRNA: 3'- -AGGCGUCU------------UGGCCUCGGu--------UGGUCacg -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 28953 | 0.69 | 0.459788 |
Target: 5'- -gUGCAGGGCUGG-GUCAACCA-UGCu -3' miRNA: 3'- agGCGUCUUGGCCuCGGUUGGUcACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 29149 | 0.69 | 0.500087 |
Target: 5'- -aCGCGuGAACUGGcGCaggaauucauCGGCCAGUGCg -3' miRNA: 3'- agGCGU-CUUGGCCuCG----------GUUGGUCACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 32198 | 0.66 | 0.650057 |
Target: 5'- cUCCaGCAGcAAcCCGGAGUCGgcgcggacccgGCCGGcgGCa -3' miRNA: 3'- -AGG-CGUC-UU-GGCCUCGGU-----------UGGUCa-CG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 33419 | 0.67 | 0.584755 |
Target: 5'- -aCGCAGcAACCGGcauuGCCGAagacCCGGcUGCu -3' miRNA: 3'- agGCGUC-UUGGCCu---CGGUU----GGUC-ACG- -5' |
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22556 | 5' | -56.3 | NC_005091.1 | + | 36487 | 0.66 | 0.682616 |
Target: 5'- gCUGCGGcGGCCGGAucgaaGCgGAUCAGcGCa -3' miRNA: 3'- aGGCGUC-UUGGCCU-----CGgUUGGUCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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