miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22556 5' -56.3 NC_005091.1 + 44427 0.78 0.13052
Target:  5'- aCCGUAGAgGCCGGGaacGCUuGCCGGUGCa -3'
miRNA:   3'- aGGCGUCU-UGGCCU---CGGuUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 41010 0.66 0.682616
Target:  5'- -aCGgAGAcgccgGCCGGGGCCGACgAGg-- -3'
miRNA:   3'- agGCgUCU-----UGGCCUCGGUUGgUCacg -5'
22556 5' -56.3 NC_005091.1 + 24943 0.66 0.671797
Target:  5'- cUCGUAGAcgauucggccGCCGcaguGCCGACCAGUcucGCa -3'
miRNA:   3'- aGGCGUCU----------UGGCcu--CGGUUGGUCA---CG- -5'
22556 5' -56.3 NC_005091.1 + 56128 0.66 0.66094
Target:  5'- uUCCGCAaggcuagcgucGAACuCGGGcuGCCGAUucgCAGUGUg -3'
miRNA:   3'- -AGGCGU-----------CUUG-GCCU--CGGUUG---GUCACG- -5'
22556 5' -56.3 NC_005091.1 + 50770 0.66 0.639158
Target:  5'- gCCGCAGu-UCGcGGGCCAGCUug-GCa -3'
miRNA:   3'- aGGCGUCuuGGC-CUCGGUUGGucaCG- -5'
22556 5' -56.3 NC_005091.1 + 28690 0.67 0.61735
Target:  5'- uUCUGCGGGcgcacgacacacGCCGGGGCCugcgcgcauGCCAGc-- -3'
miRNA:   3'- -AGGCGUCU------------UGGCCUCGGu--------UGGUCacg -5'
22556 5' -56.3 NC_005091.1 + 43979 0.67 0.606461
Target:  5'- -gCGCGGAAUCGGGGUgAGCUGGg-- -3'
miRNA:   3'- agGCGUCUUGGCCUCGgUUGGUCacg -5'
22556 5' -56.3 NC_005091.1 + 12349 0.67 0.595593
Target:  5'- --aGCGGcuauacaaaaaGACCGcgacGAGCgCGGCCAGUGCg -3'
miRNA:   3'- aggCGUC-----------UUGGC----CUCG-GUUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 12197 0.67 0.594508
Target:  5'- gUCCGgcauCAGGACCcacacauGGAGCaggguauCCGGUGCg -3'
miRNA:   3'- -AGGC----GUCUUGG-------CCUCGguu----GGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 23955 0.67 0.592338
Target:  5'- gCCGCAGAuGCCGG-GCCAguggcugaaucguuGCCGacGCg -3'
miRNA:   3'- aGGCGUCU-UGGCCuCGGU--------------UGGUcaCG- -5'
22556 5' -56.3 NC_005091.1 + 4667 0.74 0.241624
Target:  5'- cUCCGCGcgucguuuuGGGCCGGGGCCGucGCUGGUaGCu -3'
miRNA:   3'- -AGGCGU---------CUUGGCCUCGGU--UGGUCA-CG- -5'
22556 5' -56.3 NC_005091.1 + 8668 0.71 0.384781
Target:  5'- -gCGCAGAcauCCGGGGCaCGcuguUCAGUGCa -3'
miRNA:   3'- agGCGUCUu--GGCCUCG-GUu---GGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 55137 0.69 0.469706
Target:  5'- cCCGCGcacGGGCCGcgucgaacGAGCCGACCGGggGUu -3'
miRNA:   3'- aGGCGU---CUUGGC--------CUCGGUUGGUCa-CG- -5'
22556 5' -56.3 NC_005091.1 + 53175 0.69 0.479731
Target:  5'- -gCGCGGG--CGcGAGCCuuCCGGUGCa -3'
miRNA:   3'- agGCGUCUugGC-CUCGGuuGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 29149 0.69 0.500087
Target:  5'- -aCGCGuGAACUGGcGCaggaauucauCGGCCAGUGCg -3'
miRNA:   3'- agGCGU-CUUGGCCuCG----------GUUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 637 0.68 0.541873
Target:  5'- aUCgCGCuGAACgCGGAGaauCGACCGG-GCa -3'
miRNA:   3'- -AG-GCGuCUUG-GCCUCg--GUUGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 58030 0.68 0.541873
Target:  5'- aUCgCGCuGAACgCGGAGaauCGACCGG-GCa -3'
miRNA:   3'- -AG-GCGuCUUG-GCCUCg--GUUGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 2684 1.13 0.000445
Target:  5'- aUCCGCAGAACCGGAGCCAACCAGUGCg -3'
miRNA:   3'- -AGGCGUCUUGGCCUCGGUUGGUCACG- -5'
22556 5' -56.3 NC_005091.1 + 36487 0.66 0.682616
Target:  5'- gCUGCGGcGGCCGGAucgaaGCgGAUCAGcGCa -3'
miRNA:   3'- aGGCGUC-UUGGCCU-----CGgUUGGUCaCG- -5'
22556 5' -56.3 NC_005091.1 + 18383 0.66 0.671797
Target:  5'- -gCGCAGAACguCGGAaacauGCgAGCCgugGGUGCg -3'
miRNA:   3'- agGCGUCUUG--GCCU-----CGgUUGG---UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.