miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 3451 1.09 0.000543
Target:  5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 32042 0.8 0.076901
Target:  5'- -gGC-GAGCGACGCGAGCaGCAcguUGCCg -3'
miRNA:   3'- aaCGuCUCGCUGUGCUCGcCGU---ACGG- -5'
22557 3' -57.2 NC_005091.1 + 44887 0.76 0.155469
Target:  5'- -aGCAG-GCGGUACGGGCGGCGgcaaggcgGCCg -3'
miRNA:   3'- aaCGUCuCGCUGUGCUCGCCGUa-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 5097 0.75 0.164217
Target:  5'- cUGCGGGGCguGACAUGGGCGGCccGUa -3'
miRNA:   3'- aACGUCUCG--CUGUGCUCGCCGuaCGg -5'
22557 3' -57.2 NC_005091.1 + 51600 0.75 0.177687
Target:  5'- -cGCAGAagcGCGGCACGGGCgcgauucGGCAugauaUGCCg -3'
miRNA:   3'- aaCGUCU---CGCUGUGCUCG-------CCGU-----ACGG- -5'
22557 3' -57.2 NC_005091.1 + 33422 0.74 0.198402
Target:  5'- -aGCAGGGCGuccuCGCGAGCGcGC-UGCg -3'
miRNA:   3'- aaCGUCUCGCu---GUGCUCGC-CGuACGg -5'
22557 3' -57.2 NC_005091.1 + 23511 0.74 0.183048
Target:  5'- aUGCAGAucaugGCGACGCGcGCGGCgAUGgCg -3'
miRNA:   3'- aACGUCU-----CGCUGUGCuCGCCG-UACgG- -5'
22557 3' -57.2 NC_005091.1 + 55399 0.73 0.226484
Target:  5'- -aGCGcGAGC-ACGCGGGCGGCAaagcUGUCg -3'
miRNA:   3'- aaCGU-CUCGcUGUGCUCGCCGU----ACGG- -5'
22557 3' -57.2 NC_005091.1 + 4218 0.73 0.238629
Target:  5'- -gGCAGAG-GAUgaaGuGCGGCGUGCCg -3'
miRNA:   3'- aaCGUCUCgCUGug-CuCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 39333 0.73 0.213169
Target:  5'- cUGCGuAGCGACACGcAGCGGCgcgaucacgagacaGUGCUu -3'
miRNA:   3'- aACGUcUCGCUGUGC-UCGCCG--------------UACGG- -5'
22557 3' -57.2 NC_005091.1 + 55598 0.72 0.257861
Target:  5'- gUGCAGgcGGCGAUcgGCGAagugauGCGGCAaGCCg -3'
miRNA:   3'- aACGUC--UCGCUG--UGCU------CGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 28260 0.72 0.257861
Target:  5'- gUGCAaccGGCGACGCGcuGGCGGCuUGCg -3'
miRNA:   3'- aACGUc--UCGCUGUGC--UCGCCGuACGg -5'
22557 3' -57.2 NC_005091.1 + 48720 0.72 0.251313
Target:  5'- cUGCAcGAGCGACACGGagauaCGGcCAUGCg -3'
miRNA:   3'- aACGU-CUCGCUGUGCUc----GCC-GUACGg -5'
22557 3' -57.2 NC_005091.1 + 28692 0.71 0.303098
Target:  5'- cUGCGG-GCG-CACGAcacacgccggggccuGCGcGCAUGCCa -3'
miRNA:   3'- aACGUCuCGCuGUGCU---------------CGC-CGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 2492 0.71 0.292705
Target:  5'- -cGgAGuGCGGCACGAGauCGGCGUGUUu -3'
miRNA:   3'- aaCgUCuCGCUGUGCUC--GCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 43245 0.71 0.315321
Target:  5'- -aGCAGAagaacuGCucguCGCGAGUGGCAUGCg -3'
miRNA:   3'- aaCGUCU------CGcu--GUGCUCGCCGUACGg -5'
22557 3' -57.2 NC_005091.1 + 56959 0.71 0.292705
Target:  5'- aUGCucgaauGCGACGCaGAGCGGgCcgGCCg -3'
miRNA:   3'- aACGucu---CGCUGUG-CUCGCC-GuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 47659 0.71 0.307638
Target:  5'- -aGCGGuucauGGCGAuCAUauAGCGGCGUGCCg -3'
miRNA:   3'- aaCGUC-----UCGCU-GUGc-UCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 1396 0.7 0.373117
Target:  5'- cUGUuc-GCGcCgAUGGGCGGCAUGCCg -3'
miRNA:   3'- aACGucuCGCuG-UGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 23369 0.7 0.347491
Target:  5'- gUGCAGucGuCGGuCAgcCGGGCGGCAUGUCg -3'
miRNA:   3'- aACGUCu-C-GCU-GU--GCUCGCCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.