miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 993 0.66 0.550633
Target:  5'- -cGCAGGccugcuCGACGCGGGCGcGC-UGCUc -3'
miRNA:   3'- aaCGUCUc-----GCUGUGCUCGC-CGuACGG- -5'
22557 3' -57.2 NC_005091.1 + 1396 0.7 0.373117
Target:  5'- cUGUuc-GCGcCgAUGGGCGGCAUGCCg -3'
miRNA:   3'- aACGucuCGCuG-UGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 2492 0.71 0.292705
Target:  5'- -cGgAGuGCGGCACGAGauCGGCGUGUUu -3'
miRNA:   3'- aaCgUCuCGCUGUGCUC--GCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 3004 0.66 0.605013
Target:  5'- aUUGCAGGGCGACGCGu------UGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCucgccguACGG- -5'
22557 3' -57.2 NC_005091.1 + 3036 0.69 0.418589
Target:  5'- -cGCAGAGCGAgaaCGCGAuucGCGUGCUg -3'
miRNA:   3'- aaCGUCUCGCU---GUGCUcgcCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 3451 1.09 0.000543
Target:  5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 4218 0.73 0.238629
Target:  5'- -gGCAGAG-GAUgaaGuGCGGCGUGCCg -3'
miRNA:   3'- aaCGUCUCgCUGug-CuCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 5097 0.75 0.164217
Target:  5'- cUGCGGGGCguGACAUGGGCGGCccGUa -3'
miRNA:   3'- aACGUCUCG--CUGUGCUCGCCGuaCGg -5'
22557 3' -57.2 NC_005091.1 + 6586 0.67 0.497842
Target:  5'- aUGUGGAuCGAguCGGGCGGCAccaUGCg -3'
miRNA:   3'- aACGUCUcGCUguGCUCGCCGU---ACGg -5'
22557 3' -57.2 NC_005091.1 + 10786 0.66 0.594056
Target:  5'- -aGCAGAGUG-CGCGAacgaucGCGGCcaagGCg -3'
miRNA:   3'- aaCGUCUCGCuGUGCU------CGCCGua--CGg -5'
22557 3' -57.2 NC_005091.1 + 13829 0.68 0.457297
Target:  5'- gUGCAGAacuuCGGCuCGGGCGGUucGCCu -3'
miRNA:   3'- aACGUCUc---GCUGuGCUCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 15618 0.67 0.497842
Target:  5'- aUUGCGGuGacuGACAaucUGAGCGGCG-GCCc -3'
miRNA:   3'- -AACGUCuCg--CUGU---GCUCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 15626 0.69 0.3909
Target:  5'- -aGCGGAGCGcugUugGAGCGGUAguagguUGCg -3'
miRNA:   3'- aaCGUCUCGCu--GugCUCGCCGU------ACGg -5'
22557 3' -57.2 NC_005091.1 + 16055 0.67 0.539919
Target:  5'- -cGCAGAGCGACAagcaggucauCGcGUGGaacGCCg -3'
miRNA:   3'- aaCGUCUCGCUGU----------GCuCGCCguaCGG- -5'
22557 3' -57.2 NC_005091.1 + 16343 0.69 0.381051
Target:  5'- gUGCucGGcGCGuucguCGCGAGCGGCGcaucgcaUGCCg -3'
miRNA:   3'- aACG--UCuCGCu----GUGCUCGCCGU-------ACGG- -5'
22557 3' -57.2 NC_005091.1 + 18464 0.69 0.399996
Target:  5'- -gGCAauucGAGCGACACGAGCcGCAacgaGCa -3'
miRNA:   3'- aaCGU----CUCGCUGUGCUCGcCGUa---CGg -5'
22557 3' -57.2 NC_005091.1 + 21116 0.66 0.583131
Target:  5'- -cGCAuaccuGCGAcCAUGGGCGGguUGCa -3'
miRNA:   3'- aaCGUcu---CGCU-GUGCUCGCCguACGg -5'
22557 3' -57.2 NC_005091.1 + 23369 0.7 0.347491
Target:  5'- gUGCAGucGuCGGuCAgcCGGGCGGCAUGUCg -3'
miRNA:   3'- aACGUCu-C-GCU-GU--GCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 23511 0.74 0.183048
Target:  5'- aUGCAGAucaugGCGACGCGcGCGGCgAUGgCg -3'
miRNA:   3'- aACGUCU-----CGCUGUGCuCGCCG-UACgG- -5'
22557 3' -57.2 NC_005091.1 + 25746 0.66 0.550633
Target:  5'- gUGCAGu---ACACGGGCGGUcucgGCCa -3'
miRNA:   3'- aACGUCucgcUGUGCUCGCCGua--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.