miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 56959 0.71 0.292705
Target:  5'- aUGCucgaauGCGACGCaGAGCGGgCcgGCCg -3'
miRNA:   3'- aACGucu---CGCUGUG-CUCGCC-GuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 55844 0.67 0.528217
Target:  5'- -cGCAGccggucagcaacuGGCG-CACGAGCuGCAcgGCCu -3'
miRNA:   3'- aaCGUC-------------UCGCuGUGCUCGcCGUa-CGG- -5'
22557 3' -57.2 NC_005091.1 + 55598 0.72 0.257861
Target:  5'- gUGCAGgcGGCGAUcgGCGAagugauGCGGCAaGCCg -3'
miRNA:   3'- aACGUC--UCGCUG--UGCU------CGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 55399 0.73 0.226484
Target:  5'- -aGCGcGAGC-ACGCGGGCGGCAaagcUGUCg -3'
miRNA:   3'- aaCGU-CUCGcUGUGCUCGCCGU----ACGG- -5'
22557 3' -57.2 NC_005091.1 + 52295 0.66 0.594056
Target:  5'- gUUGCGGAuCGAUuCGAcaGCGGCcaGUGCUg -3'
miRNA:   3'- -AACGUCUcGCUGuGCU--CGCCG--UACGG- -5'
22557 3' -57.2 NC_005091.1 + 52228 0.66 0.594056
Target:  5'- gUGCGGGGCGGCuuugAC-AGCGGCuugaaccuuUGCg -3'
miRNA:   3'- aACGUCUCGCUG----UGcUCGCCGu--------ACGg -5'
22557 3' -57.2 NC_005091.1 + 51600 0.75 0.177687
Target:  5'- -cGCAGAagcGCGGCACGGGCgcgauucGGCAugauaUGCCg -3'
miRNA:   3'- aaCGUCU---CGCUGUGCUCG-------CCGU-----ACGG- -5'
22557 3' -57.2 NC_005091.1 + 51561 0.68 0.437698
Target:  5'- gUGCAu-GCGAUcCGcGCGGCAUcGCCa -3'
miRNA:   3'- aACGUcuCGCUGuGCuCGCCGUA-CGG- -5'
22557 3' -57.2 NC_005091.1 + 49867 0.66 0.572247
Target:  5'- -gGCAGaAGcCGAUcgagcCGAGCGugcuGCAUGCCa -3'
miRNA:   3'- aaCGUC-UC-GCUGu----GCUCGC----CGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 49484 0.68 0.477357
Target:  5'- -aGCAGGccaauuGCGAacacgACGAGCGGCAgGCa -3'
miRNA:   3'- aaCGUCU------CGCUg----UGCUCGCCGUaCGg -5'
22557 3' -57.2 NC_005091.1 + 48763 0.67 0.539919
Target:  5'- -gGCcGuGCGcacGCAUGA-CGGCAUGCCu -3'
miRNA:   3'- aaCGuCuCGC---UGUGCUcGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 48720 0.72 0.251313
Target:  5'- cUGCAcGAGCGACACGGagauaCGGcCAUGCg -3'
miRNA:   3'- aACGU-CUCGCUGUGCUc----GCC-GUACGg -5'
22557 3' -57.2 NC_005091.1 + 47659 0.71 0.307638
Target:  5'- -aGCGGuucauGGCGAuCAUauAGCGGCGUGCCg -3'
miRNA:   3'- aaCGUC-----UCGCU-GUGc-UCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 47447 0.69 0.399996
Target:  5'- -aGUAGcGCGugucguuccGCACGAGCGGCA-GCg -3'
miRNA:   3'- aaCGUCuCGC---------UGUGCUCGCCGUaCGg -5'
22557 3' -57.2 NC_005091.1 + 45794 0.67 0.497842
Target:  5'- -aGCAGuAGcCGGCGCG-GCGcGCG-GCCg -3'
miRNA:   3'- aaCGUC-UC-GCUGUGCuCGC-CGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 44887 0.76 0.155469
Target:  5'- -aGCAG-GCGGUACGGGCGGCGgcaaggcgGCCg -3'
miRNA:   3'- aaCGUCuCGCUGUGCUCGCCGUa-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 43611 0.68 0.457297
Target:  5'- uUUGuCGGA-CGGCGUGAGCGGCGcaccuuucUGCCa -3'
miRNA:   3'- -AAC-GUCUcGCUGUGCUCGCCGU--------ACGG- -5'
22557 3' -57.2 NC_005091.1 + 43245 0.71 0.315321
Target:  5'- -aGCAGAagaacuGCucguCGCGAGUGGCAUGCg -3'
miRNA:   3'- aaCGUCU------CGcu--GUGCUCGCCGUACGg -5'
22557 3' -57.2 NC_005091.1 + 41429 0.67 0.497842
Target:  5'- cUGUAcGAGCugGAUcagcucaucaACGAucGCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCG--CUG----------UGCU--CGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 39333 0.73 0.213169
Target:  5'- cUGCGuAGCGACACGcAGCGGCgcgaucacgagacaGUGCUu -3'
miRNA:   3'- aACGUcUCGCUGUGC-UCGCCG--------------UACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.