miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 26228 0.67 0.497842
Target:  5'- -gGCAGcuuCGGCcUGAGCGGCA-GCCc -3'
miRNA:   3'- aaCGUCuc-GCUGuGCUCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 26682 0.66 0.550633
Target:  5'- cUGCuGcGGCGGC-CG-GCGGCG-GCCg -3'
miRNA:   3'- aACGuC-UCGCUGuGCuCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 28260 0.72 0.257861
Target:  5'- gUGCAaccGGCGACGCGcuGGCGGCuUGCg -3'
miRNA:   3'- aACGUc--UCGCUGUGC--UCGCCGuACGg -5'
22557 3' -57.2 NC_005091.1 + 28692 0.71 0.303098
Target:  5'- cUGCGG-GCG-CACGAcacacgccggggccuGCGcGCAUGCCa -3'
miRNA:   3'- aACGUCuCGCuGUGCU---------------CGC-CGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 31281 0.66 0.561412
Target:  5'- -aGCAGc-CGAuCAUcGGCGGCAUGUCg -3'
miRNA:   3'- aaCGUCucGCU-GUGcUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 32042 0.8 0.076901
Target:  5'- -gGC-GAGCGACGCGAGCaGCAcguUGCCg -3'
miRNA:   3'- aaCGuCUCGCUGUGCUCGcCGU---ACGG- -5'
22557 3' -57.2 NC_005091.1 + 33422 0.74 0.198402
Target:  5'- -aGCAGGGCGuccuCGCGAGCGcGC-UGCg -3'
miRNA:   3'- aaCGUCUCGCu---GUGCUCGC-CGuACGg -5'
22557 3' -57.2 NC_005091.1 + 34430 0.68 0.467271
Target:  5'- gUGCAGuaCGACAaGcGCGGCcgGCCg -3'
miRNA:   3'- aACGUCucGCUGUgCuCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 34852 0.66 0.561412
Target:  5'- -aGCGGAucGcCGACGCGcGCGGCcgggacaugGCCg -3'
miRNA:   3'- aaCGUCU--C-GCUGUGCuCGCCGua-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 35084 0.69 0.418589
Target:  5'- aUGCGGugacuGCGGCcCGuGCGGCGgcgGUCg -3'
miRNA:   3'- aACGUCu----CGCUGuGCuCGCCGUa--CGG- -5'
22557 3' -57.2 NC_005091.1 + 36307 0.69 0.418589
Target:  5'- aUGCGcGAGCGuc----GCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCGCugugcuCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 36405 0.67 0.539919
Target:  5'- -gGCGGA-UGACaaGCGGGuCGGCAcGCCg -3'
miRNA:   3'- aaCGUCUcGCUG--UGCUC-GCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 39333 0.73 0.213169
Target:  5'- cUGCGuAGCGACACGcAGCGGCgcgaucacgagacaGUGCUu -3'
miRNA:   3'- aACGUcUCGCUGUGC-UCGCCG--------------UACGG- -5'
22557 3' -57.2 NC_005091.1 + 41429 0.67 0.497842
Target:  5'- cUGUAcGAGCugGAUcagcucaucaACGAucGCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCG--CUG----------UGCU--CGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 43245 0.71 0.315321
Target:  5'- -aGCAGAagaacuGCucguCGCGAGUGGCAUGCg -3'
miRNA:   3'- aaCGUCU------CGcu--GUGCUCGCCGUACGg -5'
22557 3' -57.2 NC_005091.1 + 43611 0.68 0.457297
Target:  5'- uUUGuCGGA-CGGCGUGAGCGGCGcaccuuucUGCCa -3'
miRNA:   3'- -AAC-GUCUcGCUGUGCUCGCCGU--------ACGG- -5'
22557 3' -57.2 NC_005091.1 + 44887 0.76 0.155469
Target:  5'- -aGCAG-GCGGUACGGGCGGCGgcaaggcgGCCg -3'
miRNA:   3'- aaCGUCuCGCUGUGCUCGCCGUa-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 45794 0.67 0.497842
Target:  5'- -aGCAGuAGcCGGCGCG-GCGcGCG-GCCg -3'
miRNA:   3'- aaCGUC-UC-GCUGUGCuCGC-CGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 47447 0.69 0.399996
Target:  5'- -aGUAGcGCGugucguuccGCACGAGCGGCA-GCg -3'
miRNA:   3'- aaCGUCuCGC---------UGUGCUCGCCGUaCGg -5'
22557 3' -57.2 NC_005091.1 + 47659 0.71 0.307638
Target:  5'- -aGCGGuucauGGCGAuCAUauAGCGGCGUGCCg -3'
miRNA:   3'- aaCGUC-----UCGCU-GUGc-UCGCCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.