miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 28260 0.72 0.257861
Target:  5'- gUGCAaccGGCGACGCGcuGGCGGCuUGCg -3'
miRNA:   3'- aACGUc--UCGCUGUGC--UCGCCGuACGg -5'
22557 3' -57.2 NC_005091.1 + 55598 0.72 0.257861
Target:  5'- gUGCAGgcGGCGAUcgGCGAagugauGCGGCAaGCCg -3'
miRNA:   3'- aACGUC--UCGCUG--UGCU------CGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 2492 0.71 0.292705
Target:  5'- -cGgAGuGCGGCACGAGauCGGCGUGUUu -3'
miRNA:   3'- aaCgUCuCGCUGUGCUC--GCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 28692 0.71 0.303098
Target:  5'- cUGCGG-GCG-CACGAcacacgccggggccuGCGcGCAUGCCa -3'
miRNA:   3'- aACGUCuCGCuGUGCU---------------CGC-CGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 1396 0.7 0.373117
Target:  5'- cUGUuc-GCGcCgAUGGGCGGCAUGCCg -3'
miRNA:   3'- aACGucuCGCuG-UGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 41429 0.67 0.497842
Target:  5'- cUGUAcGAGCugGAUcagcucaucaACGAucGCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCG--CUG----------UGCU--CGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 34430 0.68 0.467271
Target:  5'- gUGCAGuaCGACAaGcGCGGCcgGCCg -3'
miRNA:   3'- aACGUCucGCUGUgCuCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 45794 0.67 0.497842
Target:  5'- -aGCAGuAGcCGGCGCG-GCGcGCG-GCCg -3'
miRNA:   3'- aaCGUC-UC-GCUGUGCuCGC-CGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 13829 0.68 0.457297
Target:  5'- gUGCAGAacuuCGGCuCGGGCGGUucGCCu -3'
miRNA:   3'- aACGUCUc---GCUGuGCUCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 51561 0.68 0.437698
Target:  5'- gUGCAu-GCGAUcCGcGCGGCAUcGCCa -3'
miRNA:   3'- aACGUcuCGCUGuGCuCGCCGUA-CGG- -5'
22557 3' -57.2 NC_005091.1 + 35084 0.69 0.418589
Target:  5'- aUGCGGugacuGCGGCcCGuGCGGCGgcgGUCg -3'
miRNA:   3'- aACGUCu----CGCUGuGCuCGCCGUa--CGG- -5'
22557 3' -57.2 NC_005091.1 + 6586 0.67 0.497842
Target:  5'- aUGUGGAuCGAguCGGGCGGCAccaUGCg -3'
miRNA:   3'- aACGUCUcGCUguGCUCGCCGU---ACGg -5'
22557 3' -57.2 NC_005091.1 + 15618 0.67 0.497842
Target:  5'- aUUGCGGuGacuGACAaucUGAGCGGCG-GCCc -3'
miRNA:   3'- -AACGUCuCg--CUGU---GCUCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 48763 0.67 0.539919
Target:  5'- -gGCcGuGCGcacGCAUGA-CGGCAUGCCu -3'
miRNA:   3'- aaCGuCuCGC---UGUGCUcGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 36405 0.67 0.539919
Target:  5'- -gGCGGA-UGACaaGCGGGuCGGCAcGCCg -3'
miRNA:   3'- aaCGUCUcGCUG--UGCUC-GCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 16055 0.67 0.539919
Target:  5'- -cGCAGAGCGACAagcaggucauCGcGUGGaacGCCg -3'
miRNA:   3'- aaCGUCUCGCUGU----------GCuCGCCguaCGG- -5'
22557 3' -57.2 NC_005091.1 + 26682 0.66 0.550633
Target:  5'- cUGCuGcGGCGGC-CG-GCGGCG-GCCg -3'
miRNA:   3'- aACGuC-UCGCUGuGCuCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 31281 0.66 0.561412
Target:  5'- -aGCAGc-CGAuCAUcGGCGGCAUGUCg -3'
miRNA:   3'- aaCGUCucGCU-GUGcUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 34852 0.66 0.561412
Target:  5'- -aGCGGAucGcCGACGCGcGCGGCcgggacaugGCCg -3'
miRNA:   3'- aaCGUCU--C-GCUGUGCuCGCCGua-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 3451 1.09 0.000543
Target:  5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.