miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 49867 0.66 0.572247
Target:  5'- -gGCAGaAGcCGAUcgagcCGAGCGugcuGCAUGCCa -3'
miRNA:   3'- aaCGUC-UC-GCUGu----GCUCGC----CGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 16343 0.69 0.381051
Target:  5'- gUGCucGGcGCGuucguCGCGAGCGGCGcaucgcaUGCCg -3'
miRNA:   3'- aACG--UCuCGCu----GUGCUCGCCGU-------ACGG- -5'
22557 3' -57.2 NC_005091.1 + 43245 0.71 0.315321
Target:  5'- -aGCAGAagaacuGCucguCGCGAGUGGCAUGCg -3'
miRNA:   3'- aaCGUCU------CGcu--GUGCUCGCCGUACGg -5'
22557 3' -57.2 NC_005091.1 + 3451 1.09 0.000543
Target:  5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 16055 0.67 0.539919
Target:  5'- -cGCAGAGCGACAagcaggucauCGcGUGGaacGCCg -3'
miRNA:   3'- aaCGUCUCGCUGU----------GCuCGCCguaCGG- -5'
22557 3' -57.2 NC_005091.1 + 36405 0.67 0.539919
Target:  5'- -gGCGGA-UGACaaGCGGGuCGGCAcGCCg -3'
miRNA:   3'- aaCGUCUcGCUG--UGCUC-GCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 15618 0.67 0.497842
Target:  5'- aUUGCGGuGacuGACAaucUGAGCGGCG-GCCc -3'
miRNA:   3'- -AACGUCuCg--CUGU---GCUCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 6586 0.67 0.497842
Target:  5'- aUGUGGAuCGAguCGGGCGGCAccaUGCg -3'
miRNA:   3'- aACGUCUcGCUguGCUCGCCGU---ACGg -5'
22557 3' -57.2 NC_005091.1 + 45794 0.67 0.497842
Target:  5'- -aGCAGuAGcCGGCGCG-GCGcGCG-GCCg -3'
miRNA:   3'- aaCGUC-UC-GCUGUGCuCGC-CGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 47447 0.69 0.399996
Target:  5'- -aGUAGcGCGugucguuccGCACGAGCGGCA-GCg -3'
miRNA:   3'- aaCGUCuCGC---------UGUGCUCGCCGUaCGg -5'
22557 3' -57.2 NC_005091.1 + 51561 0.68 0.437698
Target:  5'- gUGCAu-GCGAUcCGcGCGGCAUcGCCa -3'
miRNA:   3'- aACGUcuCGCUGuGCuCGCCGUA-CGG- -5'
22557 3' -57.2 NC_005091.1 + 34430 0.68 0.467271
Target:  5'- gUGCAGuaCGACAaGcGCGGCcgGCCg -3'
miRNA:   3'- aACGUCucGCUGUgCuCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 34852 0.66 0.561412
Target:  5'- -aGCGGAucGcCGACGCGcGCGGCcgggacaugGCCg -3'
miRNA:   3'- aaCGUCU--C-GCUGUGCuCGCCGua-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 35084 0.69 0.418589
Target:  5'- aUGCGGugacuGCGGCcCGuGCGGCGgcgGUCg -3'
miRNA:   3'- aACGUCu----CGCUGuGCuCGCCGUa--CGG- -5'
22557 3' -57.2 NC_005091.1 + 31281 0.66 0.561412
Target:  5'- -aGCAGc-CGAuCAUcGGCGGCAUGUCg -3'
miRNA:   3'- aaCGUCucGCU-GUGcUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 41429 0.67 0.497842
Target:  5'- cUGUAcGAGCugGAUcagcucaucaACGAucGCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCG--CUG----------UGCU--CGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 18464 0.69 0.399996
Target:  5'- -gGCAauucGAGCGACACGAGCcGCAacgaGCa -3'
miRNA:   3'- aaCGU----CUCGCUGUGCUCGcCGUa---CGg -5'
22557 3' -57.2 NC_005091.1 + 23369 0.7 0.347491
Target:  5'- gUGCAGucGuCGGuCAgcCGGGCGGCAUGUCg -3'
miRNA:   3'- aACGUCu-C-GCU-GU--GCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 26682 0.66 0.550633
Target:  5'- cUGCuGcGGCGGC-CG-GCGGCG-GCCg -3'
miRNA:   3'- aACGuC-UCGCUGuGCuCGCCGUaCGG- -5'
22557 3' -57.2 NC_005091.1 + 48763 0.67 0.539919
Target:  5'- -gGCcGuGCGcacGCAUGA-CGGCAUGCCu -3'
miRNA:   3'- aaCGuCuCGC---UGUGCUcGCCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.