miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 5' -57.9 NC_005091.1 + 3417 1.09 0.000623
Target:  5'- aGGGACACGCCGGAAGCAACCGUGCCUu -3'
miRNA:   3'- -CCCUGUGCGGCCUUCGUUGGCACGGA- -5'
22557 5' -57.9 NC_005091.1 + 42245 0.73 0.249953
Target:  5'- -cGGCACGUCGGGGaaUAACCGUGCCg -3'
miRNA:   3'- ccCUGUGCGGCCUUc-GUUGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 44185 0.72 0.297335
Target:  5'- cGGAUACGCCGugcGCGACaGUGCCg -3'
miRNA:   3'- cCCUGUGCGGCcuuCGUUGgCACGGa -5'
22557 5' -57.9 NC_005091.1 + 52452 0.7 0.359669
Target:  5'- aGGGCGCGCCGGGcGGCGACC---CCa -3'
miRNA:   3'- cCCUGUGCGGCCU-UCGUUGGcacGGa -5'
22557 5' -57.9 NC_005091.1 + 37235 0.7 0.374038
Target:  5'- --aACACGCCGGGcgcguacgugGGCGauugguucaacgagACCGUGCCg -3'
miRNA:   3'- cccUGUGCGGCCU----------UCGU--------------UGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 53659 0.7 0.359669
Target:  5'- -cGGCGCGCCGGGguugcgcuGGCAAUgGUGCg- -3'
miRNA:   3'- ccCUGUGCGGCCU--------UCGUUGgCACGga -5'
22557 5' -57.9 NC_005091.1 + 1458 0.7 0.351399
Target:  5'- -aGACAaGCCGGAcgauccGGCGGCCG-GCCUc -3'
miRNA:   3'- ccCUGUgCGGCCU------UCGUUGGCaCGGA- -5'
22557 5' -57.9 NC_005091.1 + 19551 0.69 0.403021
Target:  5'- aGGGCACGCCGcAGGCcgUCGUGUUc -3'
miRNA:   3'- cCCUGUGCGGCcUUCGuuGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 14318 0.69 0.421264
Target:  5'- -cGACACGCaaGGcGGCucGACCGUGCCc -3'
miRNA:   3'- ccCUGUGCGg-CCuUCG--UUGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 18986 0.68 0.498868
Target:  5'- -cGACugGCCGcGAugcucGGCGgaAUCGUGCCg -3'
miRNA:   3'- ccCUGugCGGC-CU-----UCGU--UGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 10245 0.68 0.459195
Target:  5'- aGGACACGCgcacaucaGGAAGUgcggcgcucGGCgCGUGCCg -3'
miRNA:   3'- cCCUGUGCGg-------CCUUCG---------UUG-GCACGGa -5'
22557 5' -57.9 NC_005091.1 + 6854 0.68 0.44954
Target:  5'- cGGAuuuucgucCACGaacaCCGGGAcuuccGCGACCGUGCCg -3'
miRNA:   3'- cCCU--------GUGC----GGCCUU-----CGUUGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 26431 0.68 0.44954
Target:  5'- cGGGC-CGCCGGGgcugccaucguAGCGGCCGggcgcgagcagGCCg -3'
miRNA:   3'- cCCUGuGCGGCCU-----------UCGUUGGCa----------CGGa -5'
22557 5' -57.9 NC_005091.1 + 44438 0.68 0.47883
Target:  5'- cGGGaACGCuuGCCGGu-GCAcccGCCaGUGCCg -3'
miRNA:   3'- -CCC-UGUG--CGGCCuuCGU---UGG-CACGGa -5'
22557 5' -57.9 NC_005091.1 + 49551 0.68 0.459195
Target:  5'- cGGcCGCGUCGGggGCGucuUCGUaccGCCUg -3'
miRNA:   3'- cCCuGUGCGGCCuuCGUu--GGCA---CGGA- -5'
22557 5' -57.9 NC_005091.1 + 44028 0.67 0.550462
Target:  5'- aGGu--CGCCgGGAAGCGACUGcGCCc -3'
miRNA:   3'- cCCuguGCGG-CCUUCGUUGGCaCGGa -5'
22557 5' -57.9 NC_005091.1 + 4219 0.67 0.539995
Target:  5'- cGGcGGCGCGCCc---GUcACCGUGCCg -3'
miRNA:   3'- -CC-CUGUGCGGccuuCGuUGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 28267 0.67 0.529595
Target:  5'- cGGcGACGCGCUGGcGGCuugCGUGaCCUu -3'
miRNA:   3'- -CC-CUGUGCGGCCuUCGuugGCAC-GGA- -5'
22557 5' -57.9 NC_005091.1 + 16607 0.67 0.519271
Target:  5'- cGGGAaugccucccUGCGCCGccuGCcaAGCCGUGCCa -3'
miRNA:   3'- -CCCU---------GUGCGGCcuuCG--UUGGCACGGa -5'
22557 5' -57.9 NC_005091.1 + 23419 0.67 0.560991
Target:  5'- cGGGACGugggGCCuuGgcGCuuCCGUGCCUg -3'
miRNA:   3'- -CCCUGUg---CGGc-CuuCGuuGGCACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.