miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 5' -57.9 NC_005091.1 + 11481 0.66 0.603576
Target:  5'- aGGGGCAgGCCGaagcgcagcguGAcGCGGCCGacGCCc -3'
miRNA:   3'- -CCCUGUgCGGC-----------CUuCGUUGGCa-CGGa -5'
22557 5' -57.9 NC_005091.1 + 33427 0.66 0.614301
Target:  5'- cGGACGCGaCGc-AGCAACCGgcauUGCCg -3'
miRNA:   3'- cCCUGUGCgGCcuUCGUUGGC----ACGGa -5'
22557 5' -57.9 NC_005091.1 + 49045 0.66 0.614301
Target:  5'- cGGGCGCGCUGcu-GCGcACCGUGUg- -3'
miRNA:   3'- cCCUGUGCGGCcuuCGU-UGGCACGga -5'
22557 5' -57.9 NC_005091.1 + 14492 0.66 0.611081
Target:  5'- aGGGCugcugaacgucgguGCGCCGGuAAGCGuGCCGcucgaUGCCg -3'
miRNA:   3'- cCCUG--------------UGCGGCC-UUCGU-UGGC-----ACGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.