miRNA: 3'- -CCCUGUg---CGGc-CuuCGuuGGCACGGA- -5'
miRNA: 3'- -CCCUGUgCGGC-----------CUuCGUUGGCa-CGGa -5'
miRNA: 3'- cCCUGUGCgGCcuUCGUUGGC----ACGGa -5'
miRNA: 3'- -CCCUGUGCGGCCUUCGUUGGCACGGA- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22557 | 5' | -57.9 | NC_005091.1 | + | 23419 | 0.67 | 0.560991 |
|
Target: 5'- cGGGACGugggGCCuuGgcGCuuCCGUGCCUg -3' miRNA: 3'- -CCCUGUg---CGGc-CuuCGuuGGCACGGA- -5' |
|||||||
| 22557 | 5' | -57.9 | NC_005091.1 | + | 11481 | 0.66 | 0.603576 |
|
Target: 5'- aGGGGCAgGCCGaagcgcagcguGAcGCGGCCGacGCCc -3' miRNA: 3'- -CCCUGUgCGGC-----------CUuCGUUGGCa-CGGa -5' |
|||||||
| 22557 | 5' | -57.9 | NC_005091.1 | + | 33427 | 0.66 | 0.614301 |
|
Target: 5'- cGGACGCGaCGc-AGCAACCGgcauUGCCg -3' miRNA: 3'- cCCUGUGCgGCcuUCGUUGGC----ACGGa -5' |
|||||||
| 22557 | 5' | -57.9 | NC_005091.1 | + | 3417 | 1.09 | 0.000623 |
|
Target: 5'- aGGGACACGCCGGAAGCAACCGUGCCUu -3' miRNA: 3'- -CCCUGUGCGGCCUUCGUUGGCACGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home