miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 30911 0.7 0.481607
Target:  5'- cUGAACCUGUUCuacaagGGCAGCACGUcCGa- -3'
miRNA:   3'- -ACUUGGGCAGG------CCGUCGUGUAuGCcg -5'
22558 3' -56 NC_005091.1 + 7522 0.7 0.480599
Target:  5'- aGAACCUGUcgaaucgCCGGuCGGCACG-GCGGa -3'
miRNA:   3'- aCUUGGGCA-------GGCC-GUCGUGUaUGCCg -5'
22558 3' -56 NC_005091.1 + 46903 0.7 0.460651
Target:  5'- aUGAACgucUCGUCCuguucgGGCAGguauagcCGCGUGCGGCa -3'
miRNA:   3'- -ACUUG---GGCAGG------CCGUC-------GUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15584 0.7 0.458681
Target:  5'- cGAAUuucaCCGUCCaguauucagacgacGGCAGUGCAuggacUACGGCa -3'
miRNA:   3'- aCUUG----GGCAGG--------------CCGUCGUGU-----AUGCCG- -5'
22558 3' -56 NC_005091.1 + 55010 0.7 0.451819
Target:  5'- cGAGCgCGUUgCGGCGGCGCAucaUAgGGUu -3'
miRNA:   3'- aCUUGgGCAG-GCCGUCGUGU---AUgCCG- -5'
22558 3' -56 NC_005091.1 + 23471 0.7 0.451819
Target:  5'- ---gUCUGUUCGGCGGCGCugcguCGGCu -3'
miRNA:   3'- acuuGGGCAGGCCGUCGUGuau--GCCG- -5'
22558 3' -56 NC_005091.1 + 51978 0.7 0.442115
Target:  5'- cGAuAUgCGUCCGGUAGCucgcgauggucgGCGcUACGGCg -3'
miRNA:   3'- aCU-UGgGCAGGCCGUCG------------UGU-AUGCCG- -5'
22558 3' -56 NC_005091.1 + 16177 0.7 0.43253
Target:  5'- cGucCCCGaUCCGGguGCaACGgcCGGCa -3'
miRNA:   3'- aCuuGGGC-AGGCCguCG-UGUauGCCG- -5'
22558 3' -56 NC_005091.1 + 35072 0.7 0.43253
Target:  5'- -cGGCCCGUgCGGCGGCGguCGUuccaAUGGCc -3'
miRNA:   3'- acUUGGGCAgGCCGUCGU--GUA----UGCCG- -5'
22558 3' -56 NC_005091.1 + 16223 0.71 0.403606
Target:  5'- --uACCCGUCgacauggucggauCGGguGCAucuCAUGCGGCu -3'
miRNA:   3'- acuUGGGCAG-------------GCCguCGU---GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 9545 0.71 0.399056
Target:  5'- cGcACCCGUgacgaggcugccgugUCGGCAGC-CAUcaACGGCg -3'
miRNA:   3'- aCuUGGGCA---------------GGCCGUCGuGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 47865 0.71 0.395441
Target:  5'- -cGACgCUGUUCGGCAGUACgccggGUGCGGUu -3'
miRNA:   3'- acUUG-GGCAGGCCGUCGUG-----UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 41334 0.71 0.386494
Target:  5'- gGAACUCGUUCGGCAgauGCGCGcgaucacCGGCc -3'
miRNA:   3'- aCUUGGGCAGGCCGU---CGUGUau-----GCCG- -5'
22558 3' -56 NC_005091.1 + 48600 0.71 0.386494
Target:  5'- gGGGuCCCaUCCGGCgaGGCGCGaAUGGCg -3'
miRNA:   3'- aCUU-GGGcAGGCCG--UCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 54830 0.71 0.386494
Target:  5'- -cGACCCGUCCgGGCGGCGCcauCaGCc -3'
miRNA:   3'- acUUGGGCAGG-CCGUCGUGuauGcCG- -5'
22558 3' -56 NC_005091.1 + 43642 0.71 0.377682
Target:  5'- -aGACCUGUCCGGCgcuucucgcgauGGCGCAca-GGCu -3'
miRNA:   3'- acUUGGGCAGGCCG------------UCGUGUaugCCG- -5'
22558 3' -56 NC_005091.1 + 9930 0.72 0.368146
Target:  5'- cGAAUCUGUacaagggcgagcaCCGGCAGUAU-UACGGCc -3'
miRNA:   3'- aCUUGGGCA-------------GGCCGUCGUGuAUGCCG- -5'
22558 3' -56 NC_005091.1 + 30104 0.72 0.360468
Target:  5'- cUGAcCCCGUCaCGGguGCGCAgACGccGCu -3'
miRNA:   3'- -ACUuGGGCAG-GCCguCGUGUaUGC--CG- -5'
22558 3' -56 NC_005091.1 + 40887 0.72 0.346272
Target:  5'- aGAGCgcccagucguugucgCCGUCCGGUucGGCgcuuucgGCGUACGGCc -3'
miRNA:   3'- aCUUG---------------GGCAGGCCG--UCG-------UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 6584 0.73 0.297208
Target:  5'- gUGGAUCgaGUCgGGCGGCAcCAUGCGGa -3'
miRNA:   3'- -ACUUGGg-CAGgCCGUCGU-GUAUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.