miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 22769 0.67 0.630172
Target:  5'- uUGAACCCGcugaCGGCcucuGCGCAgguCGGa -3'
miRNA:   3'- -ACUUGGGCag--GCCGu---CGUGUau-GCCg -5'
22558 3' -56 NC_005091.1 + 51426 0.67 0.630172
Target:  5'- cGAACCCGcgcaaGGCGuuccGCGCAcugUACGGUa -3'
miRNA:   3'- aCUUGGGCagg--CCGU----CGUGU---AUGCCG- -5'
22558 3' -56 NC_005091.1 + 10576 0.67 0.619277
Target:  5'- aGAGCU--UCCGGCAGC----GCGGCc -3'
miRNA:   3'- aCUUGGgcAGGCCGUCGuguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 31754 0.67 0.608392
Target:  5'- cGAG-CCGUCCgaGGCGGC-CGgguuccACGGCa -3'
miRNA:   3'- aCUUgGGCAGG--CCGUCGuGUa-----UGCCG- -5'
22558 3' -56 NC_005091.1 + 9642 0.67 0.608392
Target:  5'- cGAACCCGcagaaucgccUCUGGCAgGCucuCGUGuccCGGCu -3'
miRNA:   3'- aCUUGGGC----------AGGCCGU-CGu--GUAU---GCCG- -5'
22558 3' -56 NC_005091.1 + 52194 0.67 0.608392
Target:  5'- ---cCCCGcgCCGGCgacGGCcgccuuuucacgGCAUACGGCc -3'
miRNA:   3'- acuuGGGCa-GGCCG---UCG------------UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 13599 0.68 0.597528
Target:  5'- -cGACCCGgcgUCGaGCAGCgACGUgaacggucucgGCGGCg -3'
miRNA:   3'- acUUGGGCa--GGC-CGUCG-UGUA-----------UGCCG- -5'
22558 3' -56 NC_005091.1 + 47761 0.68 0.586692
Target:  5'- -cAACCaucagGUCCGGCAGCu--UGCuGGCg -3'
miRNA:   3'- acUUGGg----CAGGCCGUCGuguAUG-CCG- -5'
22558 3' -56 NC_005091.1 + 9975 0.68 0.586692
Target:  5'- cGAuCCCGUCCGGUcagccaAGCACcUGCa-- -3'
miRNA:   3'- aCUuGGGCAGGCCG------UCGUGuAUGccg -5'
22558 3' -56 NC_005091.1 + 47409 0.68 0.575894
Target:  5'- uUGAAgUUCGUCa-GCAGCAggUAUGCGGCg -3'
miRNA:   3'- -ACUU-GGGCAGgcCGUCGU--GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 45661 0.68 0.575894
Target:  5'- gGAAgCCGacgCCGGcCAGCuucACAU-CGGCg -3'
miRNA:   3'- aCUUgGGCa--GGCC-GUCG---UGUAuGCCG- -5'
22558 3' -56 NC_005091.1 + 57772 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 378 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 24630 0.68 0.554441
Target:  5'- -uGACCgauaCGUCCGGCGGCuuGUACGa- -3'
miRNA:   3'- acUUGG----GCAGGCCGUCGugUAUGCcg -5'
22558 3' -56 NC_005091.1 + 57080 0.69 0.53323
Target:  5'- cGAACUCGaCCGGCAaGaagacaACAUuGCGGCc -3'
miRNA:   3'- aCUUGGGCaGGCCGU-Cg-----UGUA-UGCCG- -5'
22558 3' -56 NC_005091.1 + 9620 0.69 0.53323
Target:  5'- -cAGCCuCGUCaCGGguGCggGCAcgACGGCg -3'
miRNA:   3'- acUUGG-GCAG-GCCguCG--UGUa-UGCCG- -5'
22558 3' -56 NC_005091.1 + 34063 0.69 0.522733
Target:  5'- aUGAACUCGggCGGCAGCuCGgacucgauaGCGGCc -3'
miRNA:   3'- -ACUUGGGCagGCCGUCGuGUa--------UGCCG- -5'
22558 3' -56 NC_005091.1 + 13879 0.69 0.512316
Target:  5'- cGAcGCUCGUUgCGGCAGCA---GCGGCc -3'
miRNA:   3'- aCU-UGGGCAG-GCCGUCGUguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 53184 0.69 0.501985
Target:  5'- cGAGCCU-UCCGGU-GCAUccgcccaaaGUGCGGCg -3'
miRNA:   3'- aCUUGGGcAGGCCGuCGUG---------UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 27800 0.69 0.491748
Target:  5'- cGAuCCCGgUCGGCGaagagacccuGCGCGUGCGGg -3'
miRNA:   3'- aCUuGGGCaGGCCGU----------CGUGUAUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.