miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 14914 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15034 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15154 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15238 0.66 0.705931
Target:  5'- cGucCCCGaUCCGG--GCGCA-ACGGCg -3'
miRNA:   3'- aCuuGGGC-AGGCCguCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 15584 0.7 0.458681
Target:  5'- cGAAUuucaCCGUCCaguauucagacgacGGCAGUGCAuggacUACGGCa -3'
miRNA:   3'- aCUUG----GGCAGG--------------CCGUCGUGU-----AUGCCG- -5'
22558 3' -56 NC_005091.1 + 15931 0.66 0.695235
Target:  5'- cGuaaCCGUCUGGUucguccacuuGGCGCucGCGGCg -3'
miRNA:   3'- aCuugGGCAGGCCG----------UCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 16177 0.7 0.43253
Target:  5'- cGucCCCGaUCCGGguGCaACGgcCGGCa -3'
miRNA:   3'- aCuuGGGC-AGGCCguCG-UGUauGCCG- -5'
22558 3' -56 NC_005091.1 + 16223 0.71 0.403606
Target:  5'- --uACCCGUCgacauggucggauCGGguGCAucuCAUGCGGCu -3'
miRNA:   3'- acuUGGGCAG-------------GCCguCGU---GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 16335 0.66 0.684479
Target:  5'- cGcgUUCGUCgCGaGCGGCGCAUcgcaugccgGCGGCc -3'
miRNA:   3'- aCuuGGGCAG-GC-CGUCGUGUA---------UGCCG- -5'
22558 3' -56 NC_005091.1 + 19309 0.66 0.716557
Target:  5'- uUGAAccacuCCCGagcgCCGcGCucGCACAUGcCGGCu -3'
miRNA:   3'- -ACUU-----GGGCa---GGC-CGu-CGUGUAU-GCCG- -5'
22558 3' -56 NC_005091.1 + 21760 0.75 0.242911
Target:  5'- -cGACCCGUguauuugCGGCAGCGaAUGCGGCg -3'
miRNA:   3'- acUUGGGCAg------GCCGUCGUgUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 22148 0.66 0.684479
Target:  5'- -uGACgCGcCCGcGCAGUGCGUACaGCa -3'
miRNA:   3'- acUUGgGCaGGC-CGUCGUGUAUGcCG- -5'
22558 3' -56 NC_005091.1 + 22769 0.67 0.630172
Target:  5'- uUGAACCCGcugaCGGCcucuGCGCAgguCGGa -3'
miRNA:   3'- -ACUUGGGCag--GCCGu---CGUGUau-GCCg -5'
22558 3' -56 NC_005091.1 + 23471 0.7 0.451819
Target:  5'- ---gUCUGUUCGGCGGCGCugcguCGGCu -3'
miRNA:   3'- acuuGGGCAGGCCGUCGUGuau--GCCG- -5'
22558 3' -56 NC_005091.1 + 24630 0.68 0.554441
Target:  5'- -uGACCgauaCGUCCGGCGGCuuGUACGa- -3'
miRNA:   3'- acUUGG----GCAGGCCGUCGugUAUGCcg -5'
22558 3' -56 NC_005091.1 + 26151 0.66 0.716557
Target:  5'- cGAAUcgCUGUCgUGGUaucAGCGCGUgcGCGGCg -3'
miRNA:   3'- aCUUG--GGCAG-GCCG---UCGUGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 26236 0.66 0.716557
Target:  5'- -cGGCCUGagCGGCAGCccgaAUACGaGCg -3'
miRNA:   3'- acUUGGGCagGCCGUCGug--UAUGC-CG- -5'
22558 3' -56 NC_005091.1 + 26338 0.66 0.673674
Target:  5'- cGcGCCCGgCCgcuacgauGGCAGCcCcgGCGGCc -3'
miRNA:   3'- aCuUGGGCaGG--------CCGUCGuGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 26700 0.66 0.672591
Target:  5'- gUGAACUCGacaagcuugcugcUgCGGCGGC-CGgcgGCGGCc -3'
miRNA:   3'- -ACUUGGGC-------------AgGCCGUCGuGUa--UGCCG- -5'
22558 3' -56 NC_005091.1 + 27800 0.69 0.491748
Target:  5'- cGAuCCCGgUCGGCGaagagacccuGCGCGUGCGGg -3'
miRNA:   3'- aCUuGGGCaGGCCGU----------CGUGUAUGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.