Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22558 | 3' | -56 | NC_005091.1 | + | 10576 | 0.67 | 0.619277 |
Target: 5'- aGAGCU--UCCGGCAGC----GCGGCc -3' miRNA: 3'- aCUUGGgcAGGCCGUCGuguaUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 52194 | 0.67 | 0.608392 |
Target: 5'- ---cCCCGcgCCGGCgacGGCcgccuuuucacgGCAUACGGCc -3' miRNA: 3'- acuuGGGCa-GGCCG---UCG------------UGUAUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 51426 | 0.67 | 0.630172 |
Target: 5'- cGAACCCGcgcaaGGCGuuccGCGCAcugUACGGUa -3' miRNA: 3'- aCUUGGGCagg--CCGU----CGUGU---AUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 52687 | 0.67 | 0.651959 |
Target: 5'- cGGGCgCGcacgCCGGcCAGUGCG-ACGGCu -3' miRNA: 3'- aCUUGgGCa---GGCC-GUCGUGUaUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 31754 | 0.67 | 0.608392 |
Target: 5'- cGAG-CCGUCCgaGGCGGC-CGgguuccACGGCa -3' miRNA: 3'- aCUUgGGCAGG--CCGUCGuGUa-----UGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 9642 | 0.67 | 0.608392 |
Target: 5'- cGAACCCGcagaaucgccUCUGGCAgGCucuCGUGuccCGGCu -3' miRNA: 3'- aCUUGGGC----------AGGCCGU-CGu--GUAU---GCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 13599 | 0.68 | 0.597528 |
Target: 5'- -cGACCCGgcgUCGaGCAGCgACGUgaacggucucgGCGGCg -3' miRNA: 3'- acUUGGGCa--GGC-CGUCG-UGUA-----------UGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 45661 | 0.68 | 0.575894 |
Target: 5'- gGAAgCCGacgCCGGcCAGCuucACAU-CGGCg -3' miRNA: 3'- aCUUgGGCa--GGCC-GUCG---UGUAuGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 47409 | 0.68 | 0.575894 |
Target: 5'- uUGAAgUUCGUCa-GCAGCAggUAUGCGGCg -3' miRNA: 3'- -ACUU-GGGCAGgcCGUCGU--GUAUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 378 | 0.68 | 0.565141 |
Target: 5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3' miRNA: 3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 24630 | 0.68 | 0.554441 |
Target: 5'- -uGACCgauaCGUCCGGCGGCuuGUACGa- -3' miRNA: 3'- acUUGG----GCAGGCCGUCGugUAUGCcg -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 47761 | 0.68 | 0.586692 |
Target: 5'- -cAACCaucagGUCCGGCAGCu--UGCuGGCg -3' miRNA: 3'- acUUGGg----CAGGCCGUCGuguAUG-CCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 57772 | 0.68 | 0.565141 |
Target: 5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3' miRNA: 3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 9975 | 0.68 | 0.586692 |
Target: 5'- cGAuCCCGUCCGGUcagccaAGCACcUGCa-- -3' miRNA: 3'- aCUuGGGCAGGCCG------UCGUGuAUGccg -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 9620 | 0.69 | 0.53323 |
Target: 5'- -cAGCCuCGUCaCGGguGCggGCAcgACGGCg -3' miRNA: 3'- acUUGG-GCAG-GCCguCG--UGUa-UGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 34063 | 0.69 | 0.522733 |
Target: 5'- aUGAACUCGggCGGCAGCuCGgacucgauaGCGGCc -3' miRNA: 3'- -ACUUGGGCagGCCGUCGuGUa--------UGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 57080 | 0.69 | 0.53323 |
Target: 5'- cGAACUCGaCCGGCAaGaagacaACAUuGCGGCc -3' miRNA: 3'- aCUUGGGCaGGCCGU-Cg-----UGUA-UGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 13879 | 0.69 | 0.512316 |
Target: 5'- cGAcGCUCGUUgCGGCAGCA---GCGGCc -3' miRNA: 3'- aCU-UGGGCAG-GCCGUCGUguaUGCCG- -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 27800 | 0.69 | 0.491748 |
Target: 5'- cGAuCCCGgUCGGCGaagagacccuGCGCGUGCGGg -3' miRNA: 3'- aCUuGGGCaGGCCGU----------CGUGUAUGCCg -5' |
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22558 | 3' | -56 | NC_005091.1 | + | 53184 | 0.69 | 0.501985 |
Target: 5'- cGAGCCU-UCCGGU-GCAUccgcccaaaGUGCGGCg -3' miRNA: 3'- aCUUGGGcAGGCCGuCGUG---------UAUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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