miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 16223 0.71 0.403606
Target:  5'- --uACCCGUCgacauggucggauCGGguGCAucuCAUGCGGCu -3'
miRNA:   3'- acuUGGGCAG-------------GCCguCGU---GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 35072 0.7 0.43253
Target:  5'- -cGGCCCGUgCGGCGGCGguCGUuccaAUGGCc -3'
miRNA:   3'- acUUGGGCAgGCCGUCGU--GUA----UGCCG- -5'
22558 3' -56 NC_005091.1 + 16177 0.7 0.43253
Target:  5'- cGucCCCGaUCCGGguGCaACGgcCGGCa -3'
miRNA:   3'- aCuuGGGC-AGGCCguCG-UGUauGCCG- -5'
22558 3' -56 NC_005091.1 + 51978 0.7 0.442115
Target:  5'- cGAuAUgCGUCCGGUAGCucgcgauggucgGCGcUACGGCg -3'
miRNA:   3'- aCU-UGgGCAGGCCGUCG------------UGU-AUGCCG- -5'
22558 3' -56 NC_005091.1 + 55010 0.7 0.451819
Target:  5'- cGAGCgCGUUgCGGCGGCGCAucaUAgGGUu -3'
miRNA:   3'- aCUUGgGCAG-GCCGUCGUGU---AUgCCG- -5'
22558 3' -56 NC_005091.1 + 23471 0.7 0.451819
Target:  5'- ---gUCUGUUCGGCGGCGCugcguCGGCu -3'
miRNA:   3'- acuuGGGCAGGCCGUCGUGuau--GCCG- -5'
22558 3' -56 NC_005091.1 + 15584 0.7 0.458681
Target:  5'- cGAAUuucaCCGUCCaguauucagacgacGGCAGUGCAuggacUACGGCa -3'
miRNA:   3'- aCUUG----GGCAGG--------------CCGUCGUGU-----AUGCCG- -5'
22558 3' -56 NC_005091.1 + 46903 0.7 0.460651
Target:  5'- aUGAACgucUCGUCCuguucgGGCAGguauagcCGCGUGCGGCa -3'
miRNA:   3'- -ACUUG---GGCAGG------CCGUC-------GUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 7522 0.7 0.480599
Target:  5'- aGAACCUGUcgaaucgCCGGuCGGCACG-GCGGa -3'
miRNA:   3'- aCUUGGGCA-------GGCC-GUCGUGUaUGCCg -5'
22558 3' -56 NC_005091.1 + 30911 0.7 0.481607
Target:  5'- cUGAACCUGUUCuacaagGGCAGCACGUcCGa- -3'
miRNA:   3'- -ACUUGGGCAGG------CCGUCGUGUAuGCcg -5'
22558 3' -56 NC_005091.1 + 27800 0.69 0.491748
Target:  5'- cGAuCCCGgUCGGCGaagagacccuGCGCGUGCGGg -3'
miRNA:   3'- aCUuGGGCaGGCCGU----------CGUGUAUGCCg -5'
22558 3' -56 NC_005091.1 + 53184 0.69 0.501985
Target:  5'- cGAGCCU-UCCGGU-GCAUccgcccaaaGUGCGGCg -3'
miRNA:   3'- aCUUGGGcAGGCCGuCGUG---------UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 13879 0.69 0.512316
Target:  5'- cGAcGCUCGUUgCGGCAGCA---GCGGCc -3'
miRNA:   3'- aCU-UGGGCAG-GCCGUCGUguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 34063 0.69 0.522733
Target:  5'- aUGAACUCGggCGGCAGCuCGgacucgauaGCGGCc -3'
miRNA:   3'- -ACUUGGGCagGCCGUCGuGUa--------UGCCG- -5'
22558 3' -56 NC_005091.1 + 57080 0.69 0.53323
Target:  5'- cGAACUCGaCCGGCAaGaagacaACAUuGCGGCc -3'
miRNA:   3'- aCUUGGGCaGGCCGU-Cg-----UGUA-UGCCG- -5'
22558 3' -56 NC_005091.1 + 9620 0.69 0.53323
Target:  5'- -cAGCCuCGUCaCGGguGCggGCAcgACGGCg -3'
miRNA:   3'- acUUGG-GCAG-GCCguCG--UGUa-UGCCG- -5'
22558 3' -56 NC_005091.1 + 24630 0.68 0.554441
Target:  5'- -uGACCgauaCGUCCGGCGGCuuGUACGa- -3'
miRNA:   3'- acUUGG----GCAGGCCGUCGugUAUGCcg -5'
22558 3' -56 NC_005091.1 + 378 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 57772 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 45661 0.68 0.575894
Target:  5'- gGAAgCCGacgCCGGcCAGCuucACAU-CGGCg -3'
miRNA:   3'- aCUUgGGCa--GGCC-GUCG---UGUAuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.