miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 4941 1.11 0.000622
Target:  5'- uUGAACCCGUCCGGCAGCACAUACGGCu -3'
miRNA:   3'- -ACUUGGGCAGGCCGUCGUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 35247 0.77 0.177184
Target:  5'- aUGcAACCUG-CCGGCAGUACcucGCGGCg -3'
miRNA:   3'- -AC-UUGGGCaGGCCGUCGUGua-UGCCG- -5'
22558 3' -56 NC_005091.1 + 32173 0.77 0.181995
Target:  5'- cGGACCCGgCCGGCGGCA---AgGGCa -3'
miRNA:   3'- aCUUGGGCaGGCCGUCGUguaUgCCG- -5'
22558 3' -56 NC_005091.1 + 39376 0.76 0.197126
Target:  5'- aGAuUCCGcUCUGGCAGCAC--ACGGCg -3'
miRNA:   3'- aCUuGGGC-AGGCCGUCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 15034 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 46030 0.76 0.213343
Target:  5'- cGAACUCGUCCacgauGGCcuGCGCAUcgacGCGGCg -3'
miRNA:   3'- aCUUGGGCAGG-----CCGu-CGUGUA----UGCCG- -5'
22558 3' -56 NC_005091.1 + 14914 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 15154 0.76 0.213343
Target:  5'- aUGGGCgCaUCCGGUGGUucGCAUGCGGCg -3'
miRNA:   3'- -ACUUGgGcAGGCCGUCG--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 21760 0.75 0.242911
Target:  5'- -cGACCCGUguauuugCGGCAGCGaAUGCGGCg -3'
miRNA:   3'- acUUGGGCAg------GCCGUCGUgUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 31836 0.74 0.275119
Target:  5'- gGAACCCGgCCGccucggacggcucGCAGaagGCGUACGGCa -3'
miRNA:   3'- aCUUGGGCaGGC-------------CGUCg--UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 6584 0.73 0.297208
Target:  5'- gUGGAUCgaGUCgGGCGGCAcCAUGCGGa -3'
miRNA:   3'- -ACUUGGg-CAGgCCGUCGU-GUAUGCCg -5'
22558 3' -56 NC_005091.1 + 40887 0.72 0.346272
Target:  5'- aGAGCgcccagucguugucgCCGUCCGGUucGGCgcuuucgGCGUACGGCc -3'
miRNA:   3'- aCUUG---------------GGCAGGCCG--UCG-------UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 30104 0.72 0.360468
Target:  5'- cUGAcCCCGUCaCGGguGCGCAgACGccGCu -3'
miRNA:   3'- -ACUuGGGCAG-GCCguCGUGUaUGC--CG- -5'
22558 3' -56 NC_005091.1 + 9930 0.72 0.368146
Target:  5'- cGAAUCUGUacaagggcgagcaCCGGCAGUAU-UACGGCc -3'
miRNA:   3'- aCUUGGGCA-------------GGCCGUCGUGuAUGCCG- -5'
22558 3' -56 NC_005091.1 + 43642 0.71 0.377682
Target:  5'- -aGACCUGUCCGGCgcuucucgcgauGGCGCAca-GGCu -3'
miRNA:   3'- acUUGGGCAGGCCG------------UCGUGUaugCCG- -5'
22558 3' -56 NC_005091.1 + 48600 0.71 0.386494
Target:  5'- gGGGuCCCaUCCGGCgaGGCGCGaAUGGCg -3'
miRNA:   3'- aCUU-GGGcAGGCCG--UCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 41334 0.71 0.386494
Target:  5'- gGAACUCGUUCGGCAgauGCGCGcgaucacCGGCc -3'
miRNA:   3'- aCUUGGGCAGGCCGU---CGUGUau-----GCCG- -5'
22558 3' -56 NC_005091.1 + 54830 0.71 0.386494
Target:  5'- -cGACCCGUCCgGGCGGCGCcauCaGCc -3'
miRNA:   3'- acUUGGGCAGG-CCGUCGUGuauGcCG- -5'
22558 3' -56 NC_005091.1 + 47865 0.71 0.395441
Target:  5'- -cGACgCUGUUCGGCAGUACgccggGUGCGGUu -3'
miRNA:   3'- acUUG-GGCAGGCCGUCGUG-----UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 9545 0.71 0.399056
Target:  5'- cGcACCCGUgacgaggcugccgugUCGGCAGC-CAUcaACGGCg -3'
miRNA:   3'- aCuUGGGCA---------------GGCCGUCGuGUA--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.