miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 378 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 2463 0.66 0.672591
Target:  5'- aUGAGCaaggCGUUCGGCuacgggaAGCucggaGUGCGGCa -3'
miRNA:   3'- -ACUUGg---GCAGGCCG-------UCGug---UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 4941 1.11 0.000622
Target:  5'- uUGAACCCGUCCGGCAGCACAUACGGCu -3'
miRNA:   3'- -ACUUGGGCAGGCCGUCGUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 5410 0.66 0.705931
Target:  5'- cGAuuUCCGUCaguuccugCGGCAGCGCGacCGGUu -3'
miRNA:   3'- aCUu-GGGCAG--------GCCGUCGUGUauGCCG- -5'
22558 3' -56 NC_005091.1 + 6584 0.73 0.297208
Target:  5'- gUGGAUCgaGUCgGGCGGCAcCAUGCGGa -3'
miRNA:   3'- -ACUUGGg-CAGgCCGUCGU-GUAUGCCg -5'
22558 3' -56 NC_005091.1 + 7351 0.67 0.64107
Target:  5'- cGAACuuGUCCaguacGCGGCugAcacCGGCa -3'
miRNA:   3'- aCUUGggCAGGc----CGUCGugUau-GCCG- -5'
22558 3' -56 NC_005091.1 + 7522 0.7 0.480599
Target:  5'- aGAACCUGUcgaaucgCCGGuCGGCACG-GCGGa -3'
miRNA:   3'- aCUUGGGCA-------GGCC-GUCGUGUaUGCCg -5'
22558 3' -56 NC_005091.1 + 9213 0.66 0.692014
Target:  5'- -cGACCCGaaucgcgcgguguuUCCGGCGGU----GCGGCc -3'
miRNA:   3'- acUUGGGC--------------AGGCCGUCGuguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 9365 0.66 0.716557
Target:  5'- -cAGCCgGU-CGGCGGC-CA-GCGGCg -3'
miRNA:   3'- acUUGGgCAgGCCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 9545 0.71 0.399056
Target:  5'- cGcACCCGUgacgaggcugccgugUCGGCAGC-CAUcaACGGCg -3'
miRNA:   3'- aCuUGGGCA---------------GGCCGUCGuGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 9620 0.69 0.53323
Target:  5'- -cAGCCuCGUCaCGGguGCggGCAcgACGGCg -3'
miRNA:   3'- acUUGG-GCAG-GCCguCG--UGUa-UGCCG- -5'
22558 3' -56 NC_005091.1 + 9642 0.67 0.608392
Target:  5'- cGAACCCGcagaaucgccUCUGGCAgGCucuCGUGuccCGGCu -3'
miRNA:   3'- aCUUGGGC----------AGGCCGU-CGu--GUAU---GCCG- -5'
22558 3' -56 NC_005091.1 + 9930 0.72 0.368146
Target:  5'- cGAAUCUGUacaagggcgagcaCCGGCAGUAU-UACGGCc -3'
miRNA:   3'- aCUUGGGCA-------------GGCCGUCGUGuAUGCCG- -5'
22558 3' -56 NC_005091.1 + 9975 0.68 0.586692
Target:  5'- cGAuCCCGUCCGGUcagccaAGCACcUGCa-- -3'
miRNA:   3'- aCUuGGGCAGGCCG------UCGUGuAUGccg -5'
22558 3' -56 NC_005091.1 + 10576 0.67 0.619277
Target:  5'- aGAGCU--UCCGGCAGC----GCGGCc -3'
miRNA:   3'- aCUUGGgcAGGCCGUCGuguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 11103 0.66 0.662831
Target:  5'- gGAAgCCGcCCGGCAaaGCGacccCGGCg -3'
miRNA:   3'- aCUUgGGCaGGCCGU--CGUguauGCCG- -5'
22558 3' -56 NC_005091.1 + 12241 0.66 0.684479
Target:  5'- cUGAuCCCG-CC-GCAGUAC--GCGGCu -3'
miRNA:   3'- -ACUuGGGCaGGcCGUCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 12373 0.66 0.695235
Target:  5'- cGAGCgCGgccagugcgaCGGCGGCGacUACGGCc -3'
miRNA:   3'- aCUUGgGCag--------GCCGUCGUguAUGCCG- -5'
22558 3' -56 NC_005091.1 + 13599 0.68 0.597528
Target:  5'- -cGACCCGgcgUCGaGCAGCgACGUgaacggucucgGCGGCg -3'
miRNA:   3'- acUUGGGCa--GGC-CGUCG-UGUA-----------UGCCG- -5'
22558 3' -56 NC_005091.1 + 13879 0.69 0.512316
Target:  5'- cGAcGCUCGUUgCGGCAGCA---GCGGCc -3'
miRNA:   3'- aCU-UGGGCAG-GCCGUCGUguaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.