miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 57772 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 57265 0.66 0.673674
Target:  5'- cGcAACCCGgcgUCGGCAGgAgGaccACGGCa -3'
miRNA:   3'- aC-UUGGGCa--GGCCGUCgUgUa--UGCCG- -5'
22558 3' -56 NC_005091.1 + 57080 0.69 0.53323
Target:  5'- cGAACUCGaCCGGCAaGaagacaACAUuGCGGCc -3'
miRNA:   3'- aCUUGGGCaGGCCGU-Cg-----UGUA-UGCCG- -5'
22558 3' -56 NC_005091.1 + 56088 0.66 0.683401
Target:  5'- gGAGgUCGgCCGGC-GCGCAUGauuacuuCGGCa -3'
miRNA:   3'- aCUUgGGCaGGCCGuCGUGUAU-------GCCG- -5'
22558 3' -56 NC_005091.1 + 55010 0.7 0.451819
Target:  5'- cGAGCgCGUUgCGGCGGCGCAucaUAgGGUu -3'
miRNA:   3'- aCUUGgGCAG-GCCGUCGUGU---AUgCCG- -5'
22558 3' -56 NC_005091.1 + 54830 0.71 0.386494
Target:  5'- -cGACCCGUCCgGGCGGCGCcauCaGCc -3'
miRNA:   3'- acUUGGGCAGG-CCGUCGUGuauGcCG- -5'
22558 3' -56 NC_005091.1 + 53184 0.69 0.501985
Target:  5'- cGAGCCU-UCCGGU-GCAUccgcccaaaGUGCGGCg -3'
miRNA:   3'- aCUUGGGcAGGCCGuCGUG---------UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 52687 0.67 0.651959
Target:  5'- cGGGCgCGcacgCCGGcCAGUGCG-ACGGCu -3'
miRNA:   3'- aCUUGgGCa---GGCC-GUCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 52194 0.67 0.608392
Target:  5'- ---cCCCGcgCCGGCgacGGCcgccuuuucacgGCAUACGGCc -3'
miRNA:   3'- acuuGGGCa-GGCCG---UCG------------UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 51978 0.7 0.442115
Target:  5'- cGAuAUgCGUCCGGUAGCucgcgauggucgGCGcUACGGCg -3'
miRNA:   3'- aCU-UGgGCAGGCCGUCG------------UGU-AUGCCG- -5'
22558 3' -56 NC_005091.1 + 51426 0.67 0.630172
Target:  5'- cGAACCCGcgcaaGGCGuuccGCGCAcugUACGGUa -3'
miRNA:   3'- aCUUGGGCagg--CCGU----CGUGU---AUGCCG- -5'
22558 3' -56 NC_005091.1 + 48600 0.71 0.386494
Target:  5'- gGGGuCCCaUCCGGCgaGGCGCGaAUGGCg -3'
miRNA:   3'- aCUU-GGGcAGGCCG--UCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 47865 0.71 0.395441
Target:  5'- -cGACgCUGUUCGGCAGUACgccggGUGCGGUu -3'
miRNA:   3'- acUUG-GGCAGGCCGUCGUG-----UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 47761 0.68 0.586692
Target:  5'- -cAACCaucagGUCCGGCAGCu--UGCuGGCg -3'
miRNA:   3'- acUUGGg----CAGGCCGUCGuguAUG-CCG- -5'
22558 3' -56 NC_005091.1 + 47409 0.68 0.575894
Target:  5'- uUGAAgUUCGUCa-GCAGCAggUAUGCGGCg -3'
miRNA:   3'- -ACUU-GGGCAGgcCGUCGU--GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 46903 0.7 0.460651
Target:  5'- aUGAACgucUCGUCCuguucgGGCAGguauagcCGCGUGCGGCa -3'
miRNA:   3'- -ACUUG---GGCAGG------CCGUC-------GUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 46030 0.76 0.213343
Target:  5'- cGAACUCGUCCacgauGGCcuGCGCAUcgacGCGGCg -3'
miRNA:   3'- aCUUGGGCAGG-----CCGu-CGUGUA----UGCCG- -5'
22558 3' -56 NC_005091.1 + 45661 0.68 0.575894
Target:  5'- gGAAgCCGacgCCGGcCAGCuucACAU-CGGCg -3'
miRNA:   3'- aCUUgGGCa--GGCC-GUCG---UGUAuGCCG- -5'
22558 3' -56 NC_005091.1 + 43642 0.71 0.377682
Target:  5'- -aGACCUGUCCGGCgcuucucgcgauGGCGCAca-GGCu -3'
miRNA:   3'- acUUGGGCAGGCCG------------UCGUGUaugCCG- -5'
22558 3' -56 NC_005091.1 + 41334 0.71 0.386494
Target:  5'- gGAACUCGUUCGGCAgauGCGCGcgaucacCGGCc -3'
miRNA:   3'- aCUUGGGCAGGCCGU---CGUGUau-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.