miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 22148 0.66 0.684479
Target:  5'- -uGACgCGcCCGcGCAGUGCGUACaGCa -3'
miRNA:   3'- acUUGgGCaGGC-CGUCGUGUAUGcCG- -5'
22558 3' -56 NC_005091.1 + 9975 0.68 0.586692
Target:  5'- cGAuCCCGUCCGGUcagccaAGCACcUGCa-- -3'
miRNA:   3'- aCUuGGGCAGGCCG------UCGUGuAUGccg -5'
22558 3' -56 NC_005091.1 + 9642 0.67 0.608392
Target:  5'- cGAACCCGcagaaucgccUCUGGCAgGCucuCGUGuccCGGCu -3'
miRNA:   3'- aCUUGGGC----------AGGCCGU-CGu--GUAU---GCCG- -5'
22558 3' -56 NC_005091.1 + 31754 0.67 0.608392
Target:  5'- cGAG-CCGUCCgaGGCGGC-CGgguuccACGGCa -3'
miRNA:   3'- aCUUgGGCAGG--CCGUCGuGUa-----UGCCG- -5'
22558 3' -56 NC_005091.1 + 7351 0.67 0.64107
Target:  5'- cGAACuuGUCCaguacGCGGCugAcacCGGCa -3'
miRNA:   3'- aCUUGggCAGGc----CGUCGugUau-GCCG- -5'
22558 3' -56 NC_005091.1 + 52687 0.67 0.651959
Target:  5'- cGGGCgCGcacgCCGGcCAGUGCG-ACGGCu -3'
miRNA:   3'- aCUUGgGCa---GGCC-GUCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 2463 0.66 0.672591
Target:  5'- aUGAGCaaggCGUUCGGCuacgggaAGCucggaGUGCGGCa -3'
miRNA:   3'- -ACUUGg---GCAGGCCG-------UCGug---UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 26338 0.66 0.673674
Target:  5'- cGcGCCCGgCCgcuacgauGGCAGCcCcgGCGGCc -3'
miRNA:   3'- aCuUGGGCaGG--------CCGUCGuGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 57265 0.66 0.673674
Target:  5'- cGcAACCCGgcgUCGGCAGgAgGaccACGGCa -3'
miRNA:   3'- aC-UUGGGCa--GGCCGUCgUgUa--UGCCG- -5'
22558 3' -56 NC_005091.1 + 57772 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 378 0.68 0.565141
Target:  5'- -cGACgCCGUCgugaaGGCGGC-CAaGCGGCg -3'
miRNA:   3'- acUUG-GGCAGg----CCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 57080 0.69 0.53323
Target:  5'- cGAACUCGaCCGGCAaGaagacaACAUuGCGGCc -3'
miRNA:   3'- aCUUGGGCaGGCCGU-Cg-----UGUA-UGCCG- -5'
22558 3' -56 NC_005091.1 + 9930 0.72 0.368146
Target:  5'- cGAAUCUGUacaagggcgagcaCCGGCAGUAU-UACGGCc -3'
miRNA:   3'- aCUUGGGCA-------------GGCCGUCGUGuAUGCCG- -5'
22558 3' -56 NC_005091.1 + 54830 0.71 0.386494
Target:  5'- -cGACCCGUCCgGGCGGCGCcauCaGCc -3'
miRNA:   3'- acUUGGGCAGG-CCGUCGUGuauGcCG- -5'
22558 3' -56 NC_005091.1 + 47865 0.71 0.395441
Target:  5'- -cGACgCUGUUCGGCAGUACgccggGUGCGGUu -3'
miRNA:   3'- acUUG-GGCAGGCCGUCGUG-----UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 9545 0.71 0.399056
Target:  5'- cGcACCCGUgacgaggcugccgugUCGGCAGC-CAUcaACGGCg -3'
miRNA:   3'- aCuUGGGCA---------------GGCCGUCGuGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 51978 0.7 0.442115
Target:  5'- cGAuAUgCGUCCGGUAGCucgcgauggucgGCGcUACGGCg -3'
miRNA:   3'- aCU-UGgGCAGGCCGUCG------------UGU-AUGCCG- -5'
22558 3' -56 NC_005091.1 + 7522 0.7 0.480599
Target:  5'- aGAACCUGUcgaaucgCCGGuCGGCACG-GCGGa -3'
miRNA:   3'- aCUUGGGCA-------GGCC-GUCGUGUaUGCCg -5'
22558 3' -56 NC_005091.1 + 53184 0.69 0.501985
Target:  5'- cGAGCCU-UCCGGU-GCAUccgcccaaaGUGCGGCg -3'
miRNA:   3'- aCUUGGGcAGGCCGuCGUG---------UAUGCCG- -5'
22558 3' -56 NC_005091.1 + 34063 0.69 0.522733
Target:  5'- aUGAACUCGggCGGCAGCuCGgacucgauaGCGGCc -3'
miRNA:   3'- -ACUUGGGCagGCCGUCGuGUa--------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.