miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 3' -56 NC_005091.1 + 9365 0.66 0.716557
Target:  5'- -cAGCCgGU-CGGCGGC-CA-GCGGCg -3'
miRNA:   3'- acUUGGgCAgGCCGUCGuGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 9620 0.69 0.53323
Target:  5'- -cAGCCuCGUCaCGGguGCggGCAcgACGGCg -3'
miRNA:   3'- acUUGG-GCAG-GCCguCG--UGUa-UGCCG- -5'
22558 3' -56 NC_005091.1 + 27800 0.69 0.491748
Target:  5'- cGAuCCCGgUCGGCGaagagacccuGCGCGUGCGGg -3'
miRNA:   3'- aCUuGGGCaGGCCGU----------CGUGUAUGCCg -5'
22558 3' -56 NC_005091.1 + 4941 1.11 0.000622
Target:  5'- uUGAACCCGUCCGGCAGCACAUACGGCu -3'
miRNA:   3'- -ACUUGGGCAGGCCGUCGUGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 16335 0.66 0.684479
Target:  5'- cGcgUUCGUCgCGaGCGGCGCAUcgcaugccgGCGGCc -3'
miRNA:   3'- aCuuGGGCAG-GC-CGUCGUGUA---------UGCCG- -5'
22558 3' -56 NC_005091.1 + 56088 0.66 0.683401
Target:  5'- gGAGgUCGgCCGGC-GCGCAUGauuacuuCGGCa -3'
miRNA:   3'- aCUUgGGCaGGCCGuCGUGUAU-------GCCG- -5'
22558 3' -56 NC_005091.1 + 11103 0.66 0.662831
Target:  5'- gGAAgCCGcCCGGCAaaGCGacccCGGCg -3'
miRNA:   3'- aCUUgGGCaGGCCGU--CGUguauGCCG- -5'
22558 3' -56 NC_005091.1 + 51426 0.67 0.630172
Target:  5'- cGAACCCGcgcaaGGCGuuccGCGCAcugUACGGUa -3'
miRNA:   3'- aCUUGGGCagg--CCGU----CGUGU---AUGCCG- -5'
22558 3' -56 NC_005091.1 + 52194 0.67 0.608392
Target:  5'- ---cCCCGcgCCGGCgacGGCcgccuuuucacgGCAUACGGCc -3'
miRNA:   3'- acuuGGGCa-GGCCG---UCG------------UGUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 24630 0.68 0.554441
Target:  5'- -uGACCgauaCGUCCGGCGGCuuGUACGa- -3'
miRNA:   3'- acUUGG----GCAGGCCGUCGugUAUGCcg -5'
22558 3' -56 NC_005091.1 + 47761 0.68 0.586692
Target:  5'- -cAACCaucagGUCCGGCAGCu--UGCuGGCg -3'
miRNA:   3'- acUUGGg----CAGGCCGUCGuguAUG-CCG- -5'
22558 3' -56 NC_005091.1 + 10576 0.67 0.619277
Target:  5'- aGAGCU--UCCGGCAGC----GCGGCc -3'
miRNA:   3'- aCUUGGgcAGGCCGUCGuguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 26151 0.66 0.716557
Target:  5'- cGAAUcgCUGUCgUGGUaucAGCGCGUgcGCGGCg -3'
miRNA:   3'- aCUUG--GGCAG-GCCG---UCGUGUA--UGCCG- -5'
22558 3' -56 NC_005091.1 + 45661 0.68 0.575894
Target:  5'- gGAAgCCGacgCCGGcCAGCuucACAU-CGGCg -3'
miRNA:   3'- aCUUgGGCa--GGCC-GUCG---UGUAuGCCG- -5'
22558 3' -56 NC_005091.1 + 15238 0.66 0.705931
Target:  5'- cGucCCCGaUCCGG--GCGCA-ACGGCg -3'
miRNA:   3'- aCuuGGGC-AGGCCguCGUGUaUGCCG- -5'
22558 3' -56 NC_005091.1 + 22769 0.67 0.630172
Target:  5'- uUGAACCCGcugaCGGCcucuGCGCAgguCGGa -3'
miRNA:   3'- -ACUUGGGCag--GCCGu---CGUGUau-GCCg -5'
22558 3' -56 NC_005091.1 + 47409 0.68 0.575894
Target:  5'- uUGAAgUUCGUCa-GCAGCAggUAUGCGGCg -3'
miRNA:   3'- -ACUU-GGGCAGgcCGUCGU--GUAUGCCG- -5'
22558 3' -56 NC_005091.1 + 13879 0.69 0.512316
Target:  5'- cGAcGCUCGUUgCGGCAGCA---GCGGCc -3'
miRNA:   3'- aCU-UGGGCAG-GCCGUCGUguaUGCCG- -5'
22558 3' -56 NC_005091.1 + 12241 0.66 0.684479
Target:  5'- cUGAuCCCG-CC-GCAGUAC--GCGGCu -3'
miRNA:   3'- -ACUuGGGCaGGcCGUCGUGuaUGCCG- -5'
22558 3' -56 NC_005091.1 + 26700 0.66 0.672591
Target:  5'- gUGAACUCGacaagcuugcugcUgCGGCGGC-CGgcgGCGGCc -3'
miRNA:   3'- -ACUUGGGC-------------AgGCCGUCGuGUa--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.