miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 57917 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 523 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 53358 0.69 0.245456
Target:  5'- gGGCCauuGUgGCCGCCGC-CUGAGCaGCa -3'
miRNA:   3'- aCUGG---CAaCGGCGGCGcGGCUCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 31781 0.69 0.233661
Target:  5'- cGGCaCGagcagGCCGCCGa--CGAGCGCGa -3'
miRNA:   3'- aCUG-GCaa---CGGCGGCgcgGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 6867 0.69 0.233661
Target:  5'- aUGGCUGUcuccGUCGCaCGCGCagcggaagCGGGCGCGa -3'
miRNA:   3'- -ACUGGCAa---CGGCG-GCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 35318 0.69 0.23136
Target:  5'- aUGAUCucgcgaaaaucGCCGCCGCGCUG-GCGUGa -3'
miRNA:   3'- -ACUGGcaa--------CGGCGGCGCGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 40551 0.69 0.227945
Target:  5'- -cGCCGccGCCGagucgguaucCCGCGCCGAGCaCGg -3'
miRNA:   3'- acUGGCaaCGGC----------GGCGCGGCUCGcGC- -5'
22558 5' -62.6 NC_005091.1 + 44528 0.69 0.22738
Target:  5'- aGGCCGUcgcUGCCGUCGCcuucgucGCCGccCGCGu -3'
miRNA:   3'- aCUGGCA---ACGGCGGCG-------CGGCucGCGC- -5'
22558 5' -62.6 NC_005091.1 + 19534 0.69 0.222347
Target:  5'- gGuCCgGUUGCUGCgcuuuCGgGCCGAGCGCc -3'
miRNA:   3'- aCuGG-CAACGGCG-----GCgCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 12968 0.7 0.216867
Target:  5'- gGGCCacgGUCGuCCGgGCCGAGCgGCGu -3'
miRNA:   3'- aCUGGcaaCGGC-GGCgCGGCUCG-CGC- -5'
22558 5' -62.6 NC_005091.1 + 15989 0.7 0.216867
Target:  5'- cGGCCGguaucGCgGaCGCGCCGAGCGaUGg -3'
miRNA:   3'- aCUGGCaa---CGgCgGCGCGGCUCGC-GC- -5'
22558 5' -62.6 NC_005091.1 + 49927 0.7 0.211503
Target:  5'- -uACCGUUGCCcugaguGCCGCGCUcaacGCGCa -3'
miRNA:   3'- acUGGCAACGG------CGGCGCGGcu--CGCGc -5'
22558 5' -62.6 NC_005091.1 + 55673 0.7 0.211503
Target:  5'- -cGCCGaucGCCGCC-UGCaCGAGCGCGu -3'
miRNA:   3'- acUGGCaa-CGGCGGcGCG-GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 31687 0.7 0.211503
Target:  5'- aGACCGggUGCgauaccguaGCCGCGCCGGcCGCc -3'
miRNA:   3'- aCUGGCa-ACGg--------CGGCGCGGCUcGCGc -5'
22558 5' -62.6 NC_005091.1 + 22736 0.7 0.206253
Target:  5'- -aGCuCGUUccGCCGCCG-GCCGucAGCGCGg -3'
miRNA:   3'- acUG-GCAA--CGGCGGCgCGGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 55440 0.7 0.206253
Target:  5'- --gUCGcgGCCGCCGUcaGCCGGGCGUc -3'
miRNA:   3'- acuGGCaaCGGCGGCG--CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 949 0.7 0.201116
Target:  5'- cGAcCCGgaaGCCGUCGUGCCGGaacccGCGCu -3'
miRNA:   3'- aCU-GGCaa-CGGCGGCGCGGCU-----CGCGc -5'
22558 5' -62.6 NC_005091.1 + 44799 0.7 0.201116
Target:  5'- cGGCCGccUUGCCGCCGC-CCGuacCGCc -3'
miRNA:   3'- aCUGGC--AACGGCGGCGcGGCuc-GCGc -5'
22558 5' -62.6 NC_005091.1 + 42331 0.7 0.201116
Target:  5'- -cGCCGUUGUCGUCGUaGCCcucggcGAGCGCu -3'
miRNA:   3'- acUGGCAACGGCGGCG-CGG------CUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 50930 0.7 0.201116
Target:  5'- -cGCCGuUUGCCGCgucaGCGaCCGcaAGCGCGg -3'
miRNA:   3'- acUGGC-AACGGCGg---CGC-GGC--UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.