miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 11469 0.67 0.32675
Target:  5'- cGGCUGUaGCCGaauGCGCCGAGgauCGCu -3'
miRNA:   3'- aCUGGCAaCGGCgg-CGCGGCUC---GCGc -5'
22558 5' -62.6 NC_005091.1 + 11017 0.67 0.319271
Target:  5'- -cGCCGggGUCGCUuuGCCGGGCGg- -3'
miRNA:   3'- acUGGCaaCGGCGGcgCGGCUCGCgc -5'
22558 5' -62.6 NC_005091.1 + 49877 0.67 0.311921
Target:  5'- cGAUCGcaucgGCagaaGCCGaucgaGCCGAGCGUGc -3'
miRNA:   3'- aCUGGCaa---CGg---CGGCg----CGGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 10909 0.67 0.311921
Target:  5'- -aGCgCGUacggGUCGUCGCuGCCGAGUGCa -3'
miRNA:   3'- acUG-GCAa---CGGCGGCG-CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 49452 0.67 0.311921
Target:  5'- aGA-CGUUGaacaCGuaGCGCaCGAGCGCGa -3'
miRNA:   3'- aCUgGCAACg---GCggCGCG-GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 34994 0.67 0.301847
Target:  5'- cGACCGccGCCGCaCGgGCCGcagucaccgcauuGCGCu -3'
miRNA:   3'- aCUGGCaaCGGCG-GCgCGGCu------------CGCGc -5'
22558 5' -62.6 NC_005091.1 + 10107 0.68 0.297608
Target:  5'- aUGAacaaCGUggucGCCGUCGUGCCGGGUuccaguucgagGCGg -3'
miRNA:   3'- -ACUg---GCAa---CGGCGGCGCGGCUCG-----------CGC- -5'
22558 5' -62.6 NC_005091.1 + 32441 0.68 0.296205
Target:  5'- cUGACCGaagaacaacugGCCGCCGaaCGCCGuGCuGCu -3'
miRNA:   3'- -ACUGGCaa---------CGGCGGC--GCGGCuCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 26651 0.68 0.290644
Target:  5'- cGAUCGagucgGCgGCCcgGCGuuGAGCGCa -3'
miRNA:   3'- aCUGGCaa---CGgCGG--CGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 44125 0.68 0.290644
Target:  5'- cGACC--UGCuCGaCCGUGCCGAGCa-- -3'
miRNA:   3'- aCUGGcaACG-GC-GGCGCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 15238 0.68 0.283133
Target:  5'- -aGCCGUcccgcUGCCGCCGCgcguguaccguugGCCGuccgugGGCGCu -3'
miRNA:   3'- acUGGCA-----ACGGCGGCG-------------CGGC------UCGCGc -5'
22558 5' -62.6 NC_005091.1 + 51274 0.68 0.264068
Target:  5'- -aAUCGUcGCCGUCGCGCCcGuGgGCGa -3'
miRNA:   3'- acUGGCAaCGGCGGCGCGG-CuCgCGC- -5'
22558 5' -62.6 NC_005091.1 + 49550 0.68 0.264068
Target:  5'- uUGGCC--UGCuCGUCGCGCuCGuGCGCu -3'
miRNA:   3'- -ACUGGcaACG-GCGGCGCG-GCuCGCGc -5'
22558 5' -62.6 NC_005091.1 + 23216 0.68 0.264068
Target:  5'- aGGCCGacuaccgUGCCGCUGUGgU-AGCGCGg -3'
miRNA:   3'- aCUGGCa------ACGGCGGCGCgGcUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 621 0.68 0.264068
Target:  5'- gGGCCaucUGCCGCucauCGCGCUGAaCGCGg -3'
miRNA:   3'- aCUGGca-ACGGCG----GCGCGGCUcGCGC- -5'
22558 5' -62.6 NC_005091.1 + 58014 0.68 0.264068
Target:  5'- gGGCCaucUGCCGCucauCGCGCUGAaCGCGg -3'
miRNA:   3'- aCUGGca-ACGGCG----GCGCGGCUcGCGC- -5'
22558 5' -62.6 NC_005091.1 + 9792 0.68 0.262156
Target:  5'- gGACCcucgGCCGCUGCGCgCGAauucaccacauccuGCGCu -3'
miRNA:   3'- aCUGGcaa-CGGCGGCGCG-GCU--------------CGCGc -5'
22558 5' -62.6 NC_005091.1 + 57985 0.69 0.25774
Target:  5'- cGGCCGcgUGCC--UGCGuuGAGCGCu -3'
miRNA:   3'- aCUGGCa-ACGGcgGCGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 591 0.69 0.25774
Target:  5'- cGGCCGcgUGCC--UGCGuuGAGCGCu -3'
miRNA:   3'- aCUGGCa-ACGGcgGCGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 53358 0.69 0.245456
Target:  5'- gGGCCauuGUgGCCGCCGC-CUGAGCaGCa -3'
miRNA:   3'- aCUGG---CAaCGGCGGCGcGGCUCG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.