miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 12885 0.71 0.18637
Target:  5'- gGGCag-UGCUGCCGCGaauucuaguacCCGAGCGCc -3'
miRNA:   3'- aCUGgcaACGGCGGCGC-----------GGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 12968 0.7 0.216867
Target:  5'- gGGCCacgGUCGuCCGgGCCGAGCgGCGu -3'
miRNA:   3'- aCUGGcaaCGGC-GGCgCGGCUCG-CGC- -5'
22558 5' -62.6 NC_005091.1 + 13510 0.71 0.177076
Target:  5'- aGACCGUUcacgucGCUGCuCGaCGCCGGGuCGCu -3'
miRNA:   3'- aCUGGCAA------CGGCG-GC-GCGGCUC-GCGc -5'
22558 5' -62.6 NC_005091.1 + 13795 0.76 0.077806
Target:  5'- uUGGCCGcUGCUGCCGCaaCGAGCGUc -3'
miRNA:   3'- -ACUGGCaACGGCGGCGcgGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 14512 0.66 0.366077
Target:  5'- -cGCCGguaagcgUGCCGCuCGaUGCCGGG-GCGa -3'
miRNA:   3'- acUGGCa------ACGGCG-GC-GCGGCUCgCGC- -5'
22558 5' -62.6 NC_005091.1 + 15238 0.68 0.283133
Target:  5'- -aGCCGUcccgcUGCCGCCGCgcguguaccguugGCCGuccgugGGCGCu -3'
miRNA:   3'- acUGGCA-----ACGGCGGCG-------------CGGC------UCGCGc -5'
22558 5' -62.6 NC_005091.1 + 15989 0.7 0.216867
Target:  5'- cGGCCGguaucGCgGaCGCGCCGAGCGaUGg -3'
miRNA:   3'- aCUGGCaa---CGgCgGCGCGGCUCGC-GC- -5'
22558 5' -62.6 NC_005091.1 + 16018 0.66 0.391191
Target:  5'- aGGCCGacaagcgucgUGCUGCCGCcgGCCG-GCgGCa -3'
miRNA:   3'- aCUGGCa---------ACGGCGGCG--CGGCuCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 19534 0.69 0.222347
Target:  5'- gGuCCgGUUGCUGCgcuuuCGgGCCGAGCGCc -3'
miRNA:   3'- aCuGG-CAACGGCG-----GCgCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 20264 0.72 0.151231
Target:  5'- cGGCCGacgcGUCGCCGCuuugcgaguagccGCCGuGCGCGa -3'
miRNA:   3'- aCUGGCaa--CGGCGGCG-------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 22736 0.7 0.206253
Target:  5'- -aGCuCGUUccGCCGCCG-GCCGucAGCGCGg -3'
miRNA:   3'- acUG-GCAA--CGGCGGCgCGGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 23216 0.68 0.264068
Target:  5'- aGGCCGacuaccgUGCCGCUGUGgU-AGCGCGg -3'
miRNA:   3'- aCUGGCa------ACGGCGGCGCgGcUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 23941 0.67 0.342097
Target:  5'- aGACCGcccuucCCGCCGCagauGCCGGGCcaGUGg -3'
miRNA:   3'- aCUGGCaac---GGCGGCG----CGGCUCG--CGC- -5'
22558 5' -62.6 NC_005091.1 + 25219 0.67 0.345228
Target:  5'- cGuCCGgggcgGCCGCUGCaccggggucgaugcaGCCG-GCGCGu -3'
miRNA:   3'- aCuGGCaa---CGGCGGCG---------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 25829 0.66 0.382696
Target:  5'- gUGGCCGagaCCGcCCGUGUacugcacaUGAGCGCGg -3'
miRNA:   3'- -ACUGGCaacGGC-GGCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 26026 0.7 0.196091
Target:  5'- -cGCCGacGUaCGCCGUGgCGAGCGCGa -3'
miRNA:   3'- acUGGCaaCG-GCGGCGCgGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 26298 0.78 0.051586
Target:  5'- aGGCCGaagcUGCCGCCGCGUCGAaagaucucacaGCGCa -3'
miRNA:   3'- aCUGGCa---ACGGCGGCGCGGCU-----------CGCGc -5'
22558 5' -62.6 NC_005091.1 + 26426 0.75 0.094041
Target:  5'- -cGCCGggGCUGCCaucguaGCgGCCGGGCGCGa -3'
miRNA:   3'- acUGGCaaCGGCGG------CG-CGGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 26601 0.66 0.349963
Target:  5'- cGGCCGccgccgGCCGCCGCagcagcaagcuuGUCGAGUucacggGCGg -3'
miRNA:   3'- aCUGGCaa----CGGCGGCG------------CGGCUCG------CGC- -5'
22558 5' -62.6 NC_005091.1 + 26651 0.68 0.290644
Target:  5'- cGAUCGagucgGCgGCCcgGCGuuGAGCGCa -3'
miRNA:   3'- aCUGGCaa---CGgCGG--CGCggCUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.