miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 523 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 591 0.69 0.25774
Target:  5'- cGGCCGcgUGCC--UGCGuuGAGCGCu -3'
miRNA:   3'- aCUGGCa-ACGGcgGCGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 621 0.68 0.264068
Target:  5'- gGGCCaucUGCCGCucauCGCGCUGAaCGCGg -3'
miRNA:   3'- aCUGGca-ACGGCG----GCGCGGCUcGCGC- -5'
22558 5' -62.6 NC_005091.1 + 714 0.67 0.342097
Target:  5'- aUGuCCGg-GCUGCUGCGUgagguCGAGCGCc -3'
miRNA:   3'- -ACuGGCaaCGGCGGCGCG-----GCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 949 0.7 0.201116
Target:  5'- cGAcCCGgaaGCCGUCGUGCCGGaacccGCGCu -3'
miRNA:   3'- aCU-GGCaa-CGGCGGCGCGGCU-----CGCGc -5'
22558 5' -62.6 NC_005091.1 + 4905 1.08 0.000258
Target:  5'- uUGACCGUUGCCGCCGCGCCGAGCGCGa -3'
miRNA:   3'- -ACUGGCAACGGCGGCGCGGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 5292 0.67 0.342097
Target:  5'- cGGCCGUUGCaCuCCuuGCaCCGuGCGCGa -3'
miRNA:   3'- aCUGGCAACG-GcGG--CGcGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 6446 0.67 0.342097
Target:  5'- gGGCagcgUGCgCGCUGCGCUGAaggaagcagGCGCGa -3'
miRNA:   3'- aCUGgca-ACG-GCGGCGCGGCU---------CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 6619 0.67 0.334359
Target:  5'- cGuCCGggcUGCCGgCGUucauGcCCGAGCGCGc -3'
miRNA:   3'- aCuGGCa--ACGGCgGCG----C-GGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 6867 0.69 0.233661
Target:  5'- aUGGCUGUcuccGUCGCaCGCGCagcggaagCGGGCGCGa -3'
miRNA:   3'- -ACUGGCAa---CGGCG-GCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 9082 0.71 0.168196
Target:  5'- cGACCGUgggucGgCGUCGUGCUGaAGCGCa -3'
miRNA:   3'- aCUGGCAa----CgGCGGCGCGGC-UCGCGc -5'
22558 5' -62.6 NC_005091.1 + 9792 0.68 0.262156
Target:  5'- gGACCcucgGCCGCUGCGCgCGAauucaccacauccuGCGCu -3'
miRNA:   3'- aCUGGcaa-CGGCGGCGCG-GCU--------------CGCGc -5'
22558 5' -62.6 NC_005091.1 + 10107 0.68 0.297608
Target:  5'- aUGAacaaCGUggucGCCGUCGUGCCGGGUuccaguucgagGCGg -3'
miRNA:   3'- -ACUg---GCAa---CGGCGGCGCGGCUCG-----------CGC- -5'
22558 5' -62.6 NC_005091.1 + 10130 0.73 0.116511
Target:  5'- aGACggaCGUUacGCCgGCaCGCGCCGAGCGCc -3'
miRNA:   3'- aCUG---GCAA--CGG-CG-GCGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 10909 0.67 0.311921
Target:  5'- -aGCgCGUacggGUCGUCGCuGCCGAGUGCa -3'
miRNA:   3'- acUG-GCAa---CGGCGGCG-CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 10966 0.71 0.168196
Target:  5'- aGGCCG--GCCGCCGgGUCGAGCu-- -3'
miRNA:   3'- aCUGGCaaCGGCGGCgCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 11017 0.67 0.319271
Target:  5'- -cGCCGggGUCGCUuuGCCGGGCGg- -3'
miRNA:   3'- acUGGCaaCGGCGGcgCGGCUCGCgc -5'
22558 5' -62.6 NC_005091.1 + 11469 0.67 0.32675
Target:  5'- cGGCUGUaGCCGaauGCGCCGAGgauCGCu -3'
miRNA:   3'- aCUGGCAaCGGCgg-CGCGGCUC---GCGc -5'
22558 5' -62.6 NC_005091.1 + 11505 0.75 0.093788
Target:  5'- cGGCCGacgugGCCGCCGCgaaacaggggcagGCCGaAGCGCa -3'
miRNA:   3'- aCUGGCaa---CGGCGGCG-------------CGGC-UCGCGc -5'
22558 5' -62.6 NC_005091.1 + 12465 0.69 0.245456
Target:  5'- cGGCCGUaGUCGCCGCcGUCGcacuGGcCGCGc -3'
miRNA:   3'- aCUGGCAaCGGCGGCG-CGGC----UC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.