miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 44528 0.69 0.22738
Target:  5'- aGGCCGUcgcUGCCGUCGCcuucgucGCCGccCGCGu -3'
miRNA:   3'- aCUGGCA---ACGGCGGCG-------CGGCucGCGC- -5'
22558 5' -62.6 NC_005091.1 + 44799 0.7 0.201116
Target:  5'- cGGCCGccUUGCCGCCGC-CCGuacCGCc -3'
miRNA:   3'- aCUGGC--AACGGCGGCGcGGCuc-GCGc -5'
22558 5' -62.6 NC_005091.1 + 42331 0.7 0.201116
Target:  5'- -cGCCGUUGUCGUCGUaGCCcucggcGAGCGCu -3'
miRNA:   3'- acUGGCAACGGCGGCG-CGG------CUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 50930 0.7 0.201116
Target:  5'- -cGCCGuUUGCCGCgucaGCGaCCGcaAGCGCGg -3'
miRNA:   3'- acUGGC-AACGGCGg---CGC-GGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 22736 0.7 0.206253
Target:  5'- -aGCuCGUUccGCCGCCG-GCCGucAGCGCGg -3'
miRNA:   3'- acUG-GCAA--CGGCGGCgCGGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 55440 0.7 0.206253
Target:  5'- --gUCGcgGCCGCCGUcaGCCGGGCGUc -3'
miRNA:   3'- acuGGCaaCGGCGGCG--CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 31687 0.7 0.211503
Target:  5'- aGACCGggUGCgauaccguaGCCGCGCCGGcCGCc -3'
miRNA:   3'- aCUGGCa-ACGg--------CGGCGCGGCUcGCGc -5'
22558 5' -62.6 NC_005091.1 + 12968 0.7 0.216867
Target:  5'- gGGCCacgGUCGuCCGgGCCGAGCgGCGu -3'
miRNA:   3'- aCUGGcaaCGGC-GGCgCGGCUCG-CGC- -5'
22558 5' -62.6 NC_005091.1 + 19534 0.69 0.222347
Target:  5'- gGuCCgGUUGCUGCgcuuuCGgGCCGAGCGCc -3'
miRNA:   3'- aCuGG-CAACGGCG-----GCgCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 949 0.7 0.201116
Target:  5'- cGAcCCGgaaGCCGUCGUGCCGGaacccGCGCu -3'
miRNA:   3'- aCU-GGCaa-CGGCGGCGCGGCU-----CGCGc -5'
22558 5' -62.6 NC_005091.1 + 32092 0.7 0.196091
Target:  5'- -uGCCcUUGCCGCCG-GCCGGGUccGCGc -3'
miRNA:   3'- acUGGcAACGGCGGCgCGGCUCG--CGC- -5'
22558 5' -62.6 NC_005091.1 + 26026 0.7 0.196091
Target:  5'- -cGCCGacGUaCGCCGUGgCGAGCGCGa -3'
miRNA:   3'- acUGGCaaCG-GCGGCGCgGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 52097 0.75 0.086723
Target:  5'- cGGCCGUaUGCCgugaaaaggcgGCCGuCGCCG-GCGCGg -3'
miRNA:   3'- aCUGGCA-ACGG-----------CGGC-GCGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 10130 0.73 0.116511
Target:  5'- aGACggaCGUUacGCCgGCaCGCGCCGAGCGCc -3'
miRNA:   3'- aCUG---GCAA--CGG-CG-GCGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 34351 0.72 0.139452
Target:  5'- cGGCCGcgcuugucguacUGCaCGCCGCGUCGAaGCGUGg -3'
miRNA:   3'- aCUGGCa-----------ACG-GCGGCGCGGCU-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 20264 0.72 0.151231
Target:  5'- cGGCCGacgcGUCGCCGCuuugcgaguagccGCCGuGCGCGa -3'
miRNA:   3'- aCUGGCaa--CGGCGGCG-------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 9082 0.71 0.168196
Target:  5'- cGACCGUgggucGgCGUCGUGCUGaAGCGCa -3'
miRNA:   3'- aCUGGCAa----CgGCGGCGCGGC-UCGCGc -5'
22558 5' -62.6 NC_005091.1 + 45925 0.71 0.172585
Target:  5'- -uGCCGgUGUugCGCCGCGUCGAuGCGCa -3'
miRNA:   3'- acUGGCaACG--GCGGCGCGGCU-CGCGc -5'
22558 5' -62.6 NC_005091.1 + 13510 0.71 0.177076
Target:  5'- aGACCGUUcacgucGCUGCuCGaCGCCGGGuCGCu -3'
miRNA:   3'- aCUGGCAA------CGGCG-GC-GCGGCUC-GCGc -5'
22558 5' -62.6 NC_005091.1 + 12885 0.71 0.18637
Target:  5'- gGGCag-UGCUGCCGCGaauucuaguacCCGAGCGCc -3'
miRNA:   3'- aCUGgcaACGGCGGCGC-----------GGCUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.