miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 25829 0.66 0.382696
Target:  5'- gUGGCCGagaCCGcCCGUGUacugcacaUGAGCGCGg -3'
miRNA:   3'- -ACUGGCaacGGC-GGCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 35318 0.69 0.23136
Target:  5'- aUGAUCucgcgaaaaucGCCGCCGCGCUG-GCGUGa -3'
miRNA:   3'- -ACUGGcaa--------CGGCGGCGCGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 55673 0.7 0.211503
Target:  5'- -cGCCGaucGCCGCC-UGCaCGAGCGCGu -3'
miRNA:   3'- acUGGCaa-CGGCGGcGCG-GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 26298 0.78 0.051586
Target:  5'- aGGCCGaagcUGCCGCCGCGUCGAaagaucucacaGCGCa -3'
miRNA:   3'- aCUGGCa---ACGGCGGCGCGGCU-----------CGCGc -5'
22558 5' -62.6 NC_005091.1 + 25219 0.67 0.345228
Target:  5'- cGuCCGgggcgGCCGCUGCaccggggucgaugcaGCCG-GCGCGu -3'
miRNA:   3'- aCuGGCaa---CGGCGGCG---------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 5292 0.67 0.342097
Target:  5'- cGGCCGUUGCaCuCCuuGCaCCGuGCGCGa -3'
miRNA:   3'- aCUGGCAACG-GcGG--CGcGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 10909 0.67 0.311921
Target:  5'- -aGCgCGUacggGUCGUCGCuGCCGAGUGCa -3'
miRNA:   3'- acUG-GCAa---CGGCGGCG-CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 10107 0.68 0.297608
Target:  5'- aUGAacaaCGUggucGCCGUCGUGCCGGGUuccaguucgagGCGg -3'
miRNA:   3'- -ACUg---GCAa---CGGCGGCGCGGCUCG-----------CGC- -5'
22558 5' -62.6 NC_005091.1 + 49550 0.68 0.264068
Target:  5'- uUGGCC--UGCuCGUCGCGCuCGuGCGCu -3'
miRNA:   3'- -ACUGGcaACG-GCGGCGCG-GCuCGCGc -5'
22558 5' -62.6 NC_005091.1 + 57917 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 57985 0.69 0.25774
Target:  5'- cGGCCGcgUGCC--UGCGuuGAGCGCu -3'
miRNA:   3'- aCUGGCa-ACGGcgGCGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 51274 0.68 0.264068
Target:  5'- -aAUCGUcGCCGUCGCGCCcGuGgGCGa -3'
miRNA:   3'- acUGGCAaCGGCGGCGCGG-CuCgCGC- -5'
22558 5' -62.6 NC_005091.1 + 57353 0.66 0.366077
Target:  5'- -uGCCGUgguccucCUGCCGaCGCCGGGuUGCGg -3'
miRNA:   3'- acUGGCAac-----GGCGGC-GCGGCUC-GCGC- -5'
22558 5' -62.6 NC_005091.1 + 523 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 45313 0.66 0.357956
Target:  5'- cGGCCGguagaCGaCagaGCGCCGAGCGUa -3'
miRNA:   3'- aCUGGCaacg-GC-Gg--CGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 32441 0.68 0.296205
Target:  5'- cUGACCGaagaacaacugGCCGCCGaaCGCCGuGCuGCu -3'
miRNA:   3'- -ACUGGCaa---------CGGCGGC--GCGGCuCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 12465 0.69 0.245456
Target:  5'- cGGCCGUaGUCGCCGCcGUCGcacuGGcCGCGc -3'
miRNA:   3'- aCUGGCAaCGGCGGCG-CGGC----UC-GCGC- -5'
22558 5' -62.6 NC_005091.1 + 15989 0.7 0.216867
Target:  5'- cGGCCGguaucGCgGaCGCGCCGAGCGaUGg -3'
miRNA:   3'- aCUGGCaa---CGgCgGCGCGGCUCGC-GC- -5'
22558 5' -62.6 NC_005091.1 + 53111 0.66 0.357956
Target:  5'- uUGAUCcg-GCUGCCGCGCUGGGUc-- -3'
miRNA:   3'- -ACUGGcaaCGGCGGCGCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 49877 0.67 0.311921
Target:  5'- cGAUCGcaucgGCagaaGCCGaucgaGCCGAGCGUGc -3'
miRNA:   3'- aCUGGCaa---CGg---CGGCg----CGGCUCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.