Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22558 | 5' | -62.6 | NC_005091.1 | + | 4905 | 1.08 | 0.000258 |
Target: 5'- uUGACCGUUGCCGCCGCGCCGAGCGCGa -3' miRNA: 3'- -ACUGGCAACGGCGGCGCGGCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 26298 | 0.78 | 0.051586 |
Target: 5'- aGGCCGaagcUGCCGCCGCGUCGAaagaucucacaGCGCa -3' miRNA: 3'- aCUGGCa---ACGGCGGCGCGGCU-----------CGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 13795 | 0.76 | 0.077806 |
Target: 5'- uUGGCCGcUGCUGCCGCaaCGAGCGUc -3' miRNA: 3'- -ACUGGCaACGGCGGCGcgGCUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 52097 | 0.75 | 0.086723 |
Target: 5'- cGGCCGUaUGCCgugaaaaggcgGCCGuCGCCG-GCGCGg -3' miRNA: 3'- aCUGGCA-ACGG-----------CGGC-GCGGCuCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 11505 | 0.75 | 0.093788 |
Target: 5'- cGGCCGacgugGCCGCCGCgaaacaggggcagGCCGaAGCGCa -3' miRNA: 3'- aCUGGCaa---CGGCGGCG-------------CGGC-UCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 26426 | 0.75 | 0.094041 |
Target: 5'- -cGCCGggGCUGCCaucguaGCgGCCGGGCGCGa -3' miRNA: 3'- acUGGCaaCGGCGG------CG-CGGCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 10130 | 0.73 | 0.116511 |
Target: 5'- aGACggaCGUUacGCCgGCaCGCGCCGAGCGCc -3' miRNA: 3'- aCUG---GCAA--CGG-CG-GCGCGGCUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 51519 | 0.73 | 0.122866 |
Target: 5'- cGACCGggGCUGUCGaCGCUGcGCGUGc -3' miRNA: 3'- aCUGGCaaCGGCGGC-GCGGCuCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 34351 | 0.72 | 0.139452 |
Target: 5'- cGGCCGcgcuugucguacUGCaCGCCGCGUCGAaGCGUGg -3' miRNA: 3'- aCUGGCa-----------ACG-GCGGCGCGGCU-CGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 20264 | 0.72 | 0.151231 |
Target: 5'- cGGCCGacgcGUCGCCGCuuugcgaguagccGCCGuGCGCGa -3' miRNA: 3'- aCUGGCaa--CGGCGGCG-------------CGGCuCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 37274 | 0.72 | 0.154013 |
Target: 5'- cUGACCGUaucgcagGCCGCCgccaaguaccgaaaGCugaacacGCCGGGCGCGu -3' miRNA: 3'- -ACUGGCAa------CGGCGG--------------CG-------CGGCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 9082 | 0.71 | 0.168196 |
Target: 5'- cGACCGUgggucGgCGUCGUGCUGaAGCGCa -3' miRNA: 3'- aCUGGCAa----CgGCGGCGCGGC-UCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 10966 | 0.71 | 0.168196 |
Target: 5'- aGGCCG--GCCGCCGgGUCGAGCu-- -3' miRNA: 3'- aCUGGCaaCGGCGGCgCGGCUCGcgc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 45925 | 0.71 | 0.172585 |
Target: 5'- -uGCCGgUGUugCGCCGCGUCGAuGCGCa -3' miRNA: 3'- acUGGCaACG--GCGGCGCGGCU-CGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 13510 | 0.71 | 0.177076 |
Target: 5'- aGACCGUUcacgucGCUGCuCGaCGCCGGGuCGCu -3' miRNA: 3'- aCUGGCAA------CGGCG-GC-GCGGCUC-GCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 12885 | 0.71 | 0.18637 |
Target: 5'- gGGCag-UGCUGCCGCGaauucuaguacCCGAGCGCc -3' miRNA: 3'- aCUGgcaACGGCGGCGC-----------GGCUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 32092 | 0.7 | 0.196091 |
Target: 5'- -uGCCcUUGCCGCCG-GCCGGGUccGCGc -3' miRNA: 3'- acUGGcAACGGCGGCgCGGCUCG--CGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 26026 | 0.7 | 0.196091 |
Target: 5'- -cGCCGacGUaCGCCGUGgCGAGCGCGa -3' miRNA: 3'- acUGGCaaCG-GCGGCGCgGCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 33719 | 0.7 | 0.196091 |
Target: 5'- gUGAagucCCGaUGCCGCCGgGCC-AGaCGCGg -3' miRNA: 3'- -ACU----GGCaACGGCGGCgCGGcUC-GCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 50930 | 0.7 | 0.201116 |
Target: 5'- -cGCCGuUUGCCGCgucaGCGaCCGcaAGCGCGg -3' miRNA: 3'- acUGGC-AACGGCGg---CGC-GGC--UCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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