Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22558 | 5' | -62.6 | NC_005091.1 | + | 42331 | 0.7 | 0.201116 |
Target: 5'- -cGCCGUUGUCGUCGUaGCCcucggcGAGCGCu -3' miRNA: 3'- acUGGCAACGGCGGCG-CGG------CUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 44799 | 0.7 | 0.201116 |
Target: 5'- cGGCCGccUUGCCGCCGC-CCGuacCGCc -3' miRNA: 3'- aCUGGC--AACGGCGGCGcGGCuc-GCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 949 | 0.7 | 0.201116 |
Target: 5'- cGAcCCGgaaGCCGUCGUGCCGGaacccGCGCu -3' miRNA: 3'- aCU-GGCaa-CGGCGGCGCGGCU-----CGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 22736 | 0.7 | 0.206253 |
Target: 5'- -aGCuCGUUccGCCGCCG-GCCGucAGCGCGg -3' miRNA: 3'- acUG-GCAA--CGGCGGCgCGGC--UCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 55440 | 0.7 | 0.206253 |
Target: 5'- --gUCGcgGCCGCCGUcaGCCGGGCGUc -3' miRNA: 3'- acuGGCaaCGGCGGCG--CGGCUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 55673 | 0.7 | 0.211503 |
Target: 5'- -cGCCGaucGCCGCC-UGCaCGAGCGCGu -3' miRNA: 3'- acUGGCaa-CGGCGGcGCG-GCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 49927 | 0.7 | 0.211503 |
Target: 5'- -uACCGUUGCCcugaguGCCGCGCUcaacGCGCa -3' miRNA: 3'- acUGGCAACGG------CGGCGCGGcu--CGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 31687 | 0.7 | 0.211503 |
Target: 5'- aGACCGggUGCgauaccguaGCCGCGCCGGcCGCc -3' miRNA: 3'- aCUGGCa-ACGg--------CGGCGCGGCUcGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 12968 | 0.7 | 0.216867 |
Target: 5'- gGGCCacgGUCGuCCGgGCCGAGCgGCGu -3' miRNA: 3'- aCUGGcaaCGGC-GGCgCGGCUCG-CGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 15989 | 0.7 | 0.216867 |
Target: 5'- cGGCCGguaucGCgGaCGCGCCGAGCGaUGg -3' miRNA: 3'- aCUGGCaa---CGgCgGCGCGGCUCGC-GC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 19534 | 0.69 | 0.222347 |
Target: 5'- gGuCCgGUUGCUGCgcuuuCGgGCCGAGCGCc -3' miRNA: 3'- aCuGG-CAACGGCG-----GCgCGGCUCGCGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 44528 | 0.69 | 0.22738 |
Target: 5'- aGGCCGUcgcUGCCGUCGCcuucgucGCCGccCGCGu -3' miRNA: 3'- aCUGGCA---ACGGCGGCG-------CGGCucGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 40551 | 0.69 | 0.227945 |
Target: 5'- -cGCCGccGCCGagucgguaucCCGCGCCGAGCaCGg -3' miRNA: 3'- acUGGCaaCGGC----------GGCGCGGCUCGcGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 35318 | 0.69 | 0.23136 |
Target: 5'- aUGAUCucgcgaaaaucGCCGCCGCGCUG-GCGUGa -3' miRNA: 3'- -ACUGGcaa--------CGGCGGCGCGGCuCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 31781 | 0.69 | 0.233661 |
Target: 5'- cGGCaCGagcagGCCGCCGa--CGAGCGCGa -3' miRNA: 3'- aCUG-GCaa---CGGCGGCgcgGCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 6867 | 0.69 | 0.233661 |
Target: 5'- aUGGCUGUcuccGUCGCaCGCGCagcggaagCGGGCGCGa -3' miRNA: 3'- -ACUGGCAa---CGGCG-GCGCG--------GCUCGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 523 | 0.69 | 0.245456 |
Target: 5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3' miRNA: 3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 12465 | 0.69 | 0.245456 |
Target: 5'- cGGCCGUaGUCGCCGCcGUCGcacuGGcCGCGc -3' miRNA: 3'- aCUGGCAaCGGCGGCG-CGGC----UC-GCGC- -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 53358 | 0.69 | 0.245456 |
Target: 5'- gGGCCauuGUgGCCGCCGC-CUGAGCaGCa -3' miRNA: 3'- aCUGG---CAaCGGCGGCGcGGCUCG-CGc -5' |
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22558 | 5' | -62.6 | NC_005091.1 | + | 57917 | 0.69 | 0.245456 |
Target: 5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3' miRNA: 3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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