miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 58014 0.68 0.264068
Target:  5'- gGGCCaucUGCCGCucauCGCGCUGAaCGCGg -3'
miRNA:   3'- aCUGGca-ACGGCG----GCGCGGCUcGCGC- -5'
22558 5' -62.6 NC_005091.1 + 57985 0.69 0.25774
Target:  5'- cGGCCGcgUGCC--UGCGuuGAGCGCu -3'
miRNA:   3'- aCUGGCa-ACGGcgGCGCggCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 57917 0.69 0.245456
Target:  5'- cGACCGccgaUUGCUGCUcgaccuGCGCCGucGCGUGc -3'
miRNA:   3'- aCUGGC----AACGGCGG------CGCGGCu-CGCGC- -5'
22558 5' -62.6 NC_005091.1 + 57353 0.66 0.366077
Target:  5'- -uGCCGUgguccucCUGCCGaCGCCGGGuUGCGg -3'
miRNA:   3'- acUGGCAac-----GGCGGC-GCGGCUC-GCGC- -5'
22558 5' -62.6 NC_005091.1 + 55673 0.7 0.211503
Target:  5'- -cGCCGaucGCCGCC-UGCaCGAGCGCGu -3'
miRNA:   3'- acUGGCaa-CGGCGGcGCG-GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 55440 0.7 0.206253
Target:  5'- --gUCGcgGCCGCCGUcaGCCGGGCGUc -3'
miRNA:   3'- acuGGCaaCGGCGGCG--CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 54296 0.66 0.365259
Target:  5'- aUGGCCGcaGuaGCCGCacuuaaccgcaugGUCGAGCGCu -3'
miRNA:   3'- -ACUGGCaaCggCGGCG-------------CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 53358 0.69 0.245456
Target:  5'- gGGCCauuGUgGCCGCCGC-CUGAGCaGCa -3'
miRNA:   3'- aCUGG---CAaCGGCGGCGcGGCUCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 53111 0.66 0.357956
Target:  5'- uUGAUCcg-GCUGCCGCGCUGGGUc-- -3'
miRNA:   3'- -ACUGGcaaCGGCGGCGCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 52097 0.75 0.086723
Target:  5'- cGGCCGUaUGCCgugaaaaggcgGCCGuCGCCG-GCGCGg -3'
miRNA:   3'- aCUGGCA-ACGG-----------CGGC-GCGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 51519 0.73 0.122866
Target:  5'- cGACCGggGCUGUCGaCGCUGcGCGUGc -3'
miRNA:   3'- aCUGGCaaCGGCGGC-GCGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 51274 0.68 0.264068
Target:  5'- -aAUCGUcGCCGUCGCGCCcGuGgGCGa -3'
miRNA:   3'- acUGGCAaCGGCGGCGCGG-CuCgCGC- -5'
22558 5' -62.6 NC_005091.1 + 50930 0.7 0.201116
Target:  5'- -cGCCGuUUGCCGCgucaGCGaCCGcaAGCGCGg -3'
miRNA:   3'- acUGGC-AACGGCGg---CGC-GGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 49927 0.7 0.211503
Target:  5'- -uACCGUUGCCcugaguGCCGCGCUcaacGCGCa -3'
miRNA:   3'- acUGGCAACGG------CGGCGCGGcu--CGCGc -5'
22558 5' -62.6 NC_005091.1 + 49877 0.67 0.311921
Target:  5'- cGAUCGcaucgGCagaaGCCGaucgaGCCGAGCGUGc -3'
miRNA:   3'- aCUGGCaa---CGg---CGGCg----CGGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 49824 0.66 0.349963
Target:  5'- cGuuCGUgGCgGCuugCGCGuuGAGCGCGg -3'
miRNA:   3'- aCugGCAaCGgCG---GCGCggCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 49550 0.68 0.264068
Target:  5'- uUGGCC--UGCuCGUCGCGCuCGuGCGCu -3'
miRNA:   3'- -ACUGGcaACG-GCGGCGCG-GCuCGCGc -5'
22558 5' -62.6 NC_005091.1 + 49452 0.67 0.311921
Target:  5'- aGA-CGUUGaacaCGuaGCGCaCGAGCGCGa -3'
miRNA:   3'- aCUgGCAACg---GCggCGCG-GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 49033 0.66 0.382696
Target:  5'- cGugCGgUGCUGCgggCGCGCUGcuGCGCa -3'
miRNA:   3'- aCugGCaACGGCG---GCGCGGCu-CGCGc -5'
22558 5' -62.6 NC_005091.1 + 45925 0.71 0.172585
Target:  5'- -uGCCGgUGUugCGCCGCGUCGAuGCGCa -3'
miRNA:   3'- acUGGCaACG--GCGGCGCGGCU-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.