miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 3' -54.3 NC_005091.1 + 25124 0.68 0.664249
Target:  5'- cGGCUGCAUcGACGCcCGGUGCa-GCGGc -3'
miRNA:   3'- -UUGACGUA-CUGUGcGUCGCGcaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 56813 0.68 0.653161
Target:  5'- uGGCUGCAc--CGCGCAGCcaGCG-ACGGc -3'
miRNA:   3'- -UUGACGUacuGUGCGUCG--CGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 39332 0.68 0.630936
Target:  5'- -uCUGCGUagcGACACGCAGCG-GcGCGa -3'
miRNA:   3'- uuGACGUA---CUGUGCGUCGCgCaUGCc -5'
22564 3' -54.3 NC_005091.1 + 812 0.68 0.61982
Target:  5'- cGCUGCGcUGcCGCGUGG-GUGUACGGc -3'
miRNA:   3'- uUGACGU-ACuGUGCGUCgCGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 55922 0.69 0.608714
Target:  5'- cAACUGCGUGcGCAgGCGGCGCagAUGa -3'
miRNA:   3'- -UUGACGUAC-UGUgCGUCGCGcaUGCc -5'
22564 3' -54.3 NC_005091.1 + 37241 0.69 0.608714
Target:  5'- aAGCUGa---ACACGCcgGGCGCGUACGu -3'
miRNA:   3'- -UUGACguacUGUGCG--UCGCGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 45789 0.69 0.564591
Target:  5'- uAGCcgGCGcGGCGCGCGGCcgacGCGUACaGGa -3'
miRNA:   3'- -UUGa-CGUaCUGUGCGUCG----CGCAUG-CC- -5'
22564 3' -54.3 NC_005091.1 + 57397 0.69 0.553679
Target:  5'- cGAUUGCuucuUGACGCGCAGCuucgGUACGa -3'
miRNA:   3'- -UUGACGu---ACUGUGCGUCGcg--CAUGCc -5'
22564 3' -54.3 NC_005091.1 + 41045 0.72 0.419934
Target:  5'- ---cGCAgcGCACGCAGCGCuggGCGGg -3'
miRNA:   3'- uugaCGUacUGUGCGUCGCGca-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 22144 0.73 0.347957
Target:  5'- ---gGCGUGACgcgcccGCGCAGUGCGUACa- -3'
miRNA:   3'- uugaCGUACUG------UGCGUCGCGCAUGcc -5'
22564 3' -54.3 NC_005091.1 + 49040 0.74 0.323333
Target:  5'- uGCUGCG-GGCGCGCugcuGCGCaccguGUGCGGg -3'
miRNA:   3'- uUGACGUaCUGUGCGu---CGCG-----CAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 46096 0.74 0.307652
Target:  5'- cGCUGCGUuccGGCGCGguGCGCGaGCGc -3'
miRNA:   3'- uUGACGUA---CUGUGCguCGCGCaUGCc -5'
22564 3' -54.3 NC_005091.1 + 48807 0.78 0.172296
Target:  5'- uAGCUGUGaGACGCGCuGCGCcGUACGGc -3'
miRNA:   3'- -UUGACGUaCUGUGCGuCGCG-CAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 23350 0.79 0.163064
Target:  5'- gGGCgGCAUGuCGCGCAGUGCGU-CGGc -3'
miRNA:   3'- -UUGaCGUACuGUGCGUCGCGCAuGCC- -5'
22564 3' -54.3 NC_005091.1 + 10925 1.09 0.001215
Target:  5'- cAACUGCAUGACACGCAGCGCGUACGGg -3'
miRNA:   3'- -UUGACGUACUGUGCGUCGCGCAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.