Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22564 | 3' | -54.3 | NC_005091.1 | + | 41045 | 0.72 | 0.419934 |
Target: 5'- ---cGCAgcGCACGCAGCGCuggGCGGg -3' miRNA: 3'- uugaCGUacUGUGCGUCGCGca-UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 41730 | 0.67 | 0.675306 |
Target: 5'- aAACUgGCGcuGCACGaUGGCGCGUGCGu -3' miRNA: 3'- -UUGA-CGUacUGUGC-GUCGCGCAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 45789 | 0.69 | 0.564591 |
Target: 5'- uAGCcgGCGcGGCGCGCGGCcgacGCGUACaGGa -3' miRNA: 3'- -UUGa-CGUaCUGUGCGUCG----CGCAUG-CC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 46096 | 0.74 | 0.307652 |
Target: 5'- cGCUGCGUuccGGCGCGguGCGCGaGCGc -3' miRNA: 3'- uUGACGUA---CUGUGCguCGCGCaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 48807 | 0.78 | 0.172296 |
Target: 5'- uAGCUGUGaGACGCGCuGCGCcGUACGGc -3' miRNA: 3'- -UUGACGUaCUGUGCGuCGCG-CAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 49040 | 0.74 | 0.323333 |
Target: 5'- uGCUGCG-GGCGCGCugcuGCGCaccguGUGCGGg -3' miRNA: 3'- uUGACGUaCUGUGCGu---CGCG-----CAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 49439 | 0.66 | 0.771565 |
Target: 5'- uGACUGCAuccuuagacguUGaACACGUAGCGC--ACGa -3' miRNA: 3'- -UUGACGU-----------AC-UGUGCGUCGCGcaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 49722 | 0.67 | 0.708184 |
Target: 5'- -uCUGCAUGcgggGCACGuCGGC-CGUGCGu -3' miRNA: 3'- uuGACGUAC----UGUGC-GUCGcGCAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 51587 | 0.67 | 0.675306 |
Target: 5'- ---cGCGUGACggGCGCgcagaAGCGCGgcACGGg -3' miRNA: 3'- uugaCGUACUG--UGCG-----UCGCGCa-UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 51628 | 0.66 | 0.771565 |
Target: 5'- ---cGCAUGGC-CGCGuaucagauacuGCGCGgggGCGGu -3' miRNA: 3'- uugaCGUACUGuGCGU-----------CGCGCa--UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 52115 | 0.67 | 0.708184 |
Target: 5'- aGGCgGCcgucgccGGCGCGgGGCGCGUuGCGGa -3' miRNA: 3'- -UUGaCGua-----CUGUGCgUCGCGCA-UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 55922 | 0.69 | 0.608714 |
Target: 5'- cAACUGCGUGcGCAgGCGGCGCagAUGa -3' miRNA: 3'- -UUGACGUAC-UGUgCGUCGCGcaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 56813 | 0.68 | 0.653161 |
Target: 5'- uGGCUGCAc--CGCGCAGCcaGCG-ACGGc -3' miRNA: 3'- -UUGACGUacuGUGCGUCG--CGCaUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 57397 | 0.69 | 0.553679 |
Target: 5'- cGAUUGCuucuUGACGCGCAGCuucgGUACGa -3' miRNA: 3'- -UUGACGu---ACUGUGCGUCGcg--CAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 57405 | 0.67 | 0.719006 |
Target: 5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3' miRNA: 3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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