miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 3' -54.3 NC_005091.1 + 11 0.67 0.719006
Target:  5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3'
miRNA:   3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5'
22564 3' -54.3 NC_005091.1 + 766 0.67 0.729741
Target:  5'- cACUGCGgauuCGCGCGGCGCaGUccGCGu -3'
miRNA:   3'- uUGACGUacu-GUGCGUCGCG-CA--UGCc -5'
22564 3' -54.3 NC_005091.1 + 812 0.68 0.61982
Target:  5'- cGCUGCGcUGcCGCGUGG-GUGUACGGc -3'
miRNA:   3'- uUGACGU-ACuGUGCGUCgCGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 9635 0.67 0.675306
Target:  5'- uGGCUGCc-GACACgGCAGCcucgucacGgGUGCGGg -3'
miRNA:   3'- -UUGACGuaCUGUG-CGUCG--------CgCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 10925 1.09 0.001215
Target:  5'- cAACUGCAUGACACGCAGCGCGUACGGg -3'
miRNA:   3'- -UUGACGUACUGUGCGUCGCGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 11332 0.66 0.740376
Target:  5'- cGGCUGCcgcguucGACuGCGCAuGUGCGUcACGGa -3'
miRNA:   3'- -UUGACGua-----CUG-UGCGU-CGCGCA-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 19128 0.67 0.708184
Target:  5'- uACUGCGUgGGCGgGCAGCGUcucgacuaGCGGu -3'
miRNA:   3'- uUGACGUA-CUGUgCGUCGCGca------UGCC- -5'
22564 3' -54.3 NC_005091.1 + 19405 0.66 0.781683
Target:  5'- aAGCcgGCAUGugcgaGCGCGGCGCu--CGGg -3'
miRNA:   3'- -UUGa-CGUACug---UGCGUCGCGcauGCC- -5'
22564 3' -54.3 NC_005091.1 + 22144 0.73 0.347957
Target:  5'- ---gGCGUGACgcgcccGCGCAGUGCGUACa- -3'
miRNA:   3'- uugaCGUACUG------UGCGUCGCGCAUGcc -5'
22564 3' -54.3 NC_005091.1 + 23350 0.79 0.163064
Target:  5'- gGGCgGCAUGuCGCGCAGUGCGU-CGGc -3'
miRNA:   3'- -UUGaCGUACuGUGCGUCGCGCAuGCC- -5'
22564 3' -54.3 NC_005091.1 + 25046 0.66 0.7613
Target:  5'- aGACUGCGaGACugGuCGGCacuGCG-GCGGc -3'
miRNA:   3'- -UUGACGUaCUGugC-GUCG---CGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 25124 0.68 0.664249
Target:  5'- cGGCUGCAUcGACGCcCGGUGCa-GCGGc -3'
miRNA:   3'- -UUGACGUA-CUGUGcGUCGCGcaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 26146 0.67 0.708184
Target:  5'- cGCUGuCGUGGUAU-CAGCGCGUGCGcGg -3'
miRNA:   3'- uUGAC-GUACUGUGcGUCGCGCAUGC-C- -5'
22564 3' -54.3 NC_005091.1 + 29960 0.66 0.7509
Target:  5'- cACUcgGCAUcACAuUGCAGCGCG-ACGGc -3'
miRNA:   3'- uUGA--CGUAcUGU-GCGUCGCGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 35084 0.66 0.7613
Target:  5'- --aUGCgGUGAC-UGCGGCcCGUGCGGc -3'
miRNA:   3'- uugACG-UACUGuGCGUCGcGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 35571 0.66 0.767476
Target:  5'- uGGCUGCcUGACagcuacuACGUccagcucgucuccgAGCgGCGUACGGa -3'
miRNA:   3'- -UUGACGuACUG-------UGCG--------------UCG-CGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 37241 0.69 0.608714
Target:  5'- aAGCUGa---ACACGCcgGGCGCGUACGu -3'
miRNA:   3'- -UUGACguacUGUGCG--UCGCGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 39332 0.68 0.630936
Target:  5'- -uCUGCGUagcGACACGCAGCG-GcGCGa -3'
miRNA:   3'- uuGACGUA---CUGUGCGUCGCgCaUGCc -5'
22564 3' -54.3 NC_005091.1 + 39681 0.67 0.686322
Target:  5'- --aUGCGUcGACACG--GCGCGUACGu -3'
miRNA:   3'- uugACGUA-CUGUGCguCGCGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 40016 0.67 0.686322
Target:  5'- gGAgUGCAUGAC-CGCgaAGCGCaagugGUACGa -3'
miRNA:   3'- -UUgACGUACUGuGCG--UCGCG-----CAUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.