Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22564 | 3' | -54.3 | NC_005091.1 | + | 10925 | 1.09 | 0.001215 |
Target: 5'- cAACUGCAUGACACGCAGCGCGUACGGg -3' miRNA: 3'- -UUGACGUACUGUGCGUCGCGCAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 23350 | 0.79 | 0.163064 |
Target: 5'- gGGCgGCAUGuCGCGCAGUGCGU-CGGc -3' miRNA: 3'- -UUGaCGUACuGUGCGUCGCGCAuGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 48807 | 0.78 | 0.172296 |
Target: 5'- uAGCUGUGaGACGCGCuGCGCcGUACGGc -3' miRNA: 3'- -UUGACGUaCUGUGCGuCGCG-CAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 46096 | 0.74 | 0.307652 |
Target: 5'- cGCUGCGUuccGGCGCGguGCGCGaGCGc -3' miRNA: 3'- uUGACGUA---CUGUGCguCGCGCaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 49040 | 0.74 | 0.323333 |
Target: 5'- uGCUGCG-GGCGCGCugcuGCGCaccguGUGCGGg -3' miRNA: 3'- uUGACGUaCUGUGCGu---CGCG-----CAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 22144 | 0.73 | 0.347957 |
Target: 5'- ---gGCGUGACgcgcccGCGCAGUGCGUACa- -3' miRNA: 3'- uugaCGUACUG------UGCGUCGCGCAUGcc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 41045 | 0.72 | 0.419934 |
Target: 5'- ---cGCAgcGCACGCAGCGCuggGCGGg -3' miRNA: 3'- uugaCGUacUGUGCGUCGCGca-UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 57397 | 0.69 | 0.553679 |
Target: 5'- cGAUUGCuucuUGACGCGCAGCuucgGUACGa -3' miRNA: 3'- -UUGACGu---ACUGUGCGUCGcg--CAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 45789 | 0.69 | 0.564591 |
Target: 5'- uAGCcgGCGcGGCGCGCGGCcgacGCGUACaGGa -3' miRNA: 3'- -UUGa-CGUaCUGUGCGUCG----CGCAUG-CC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 37241 | 0.69 | 0.608714 |
Target: 5'- aAGCUGa---ACACGCcgGGCGCGUACGu -3' miRNA: 3'- -UUGACguacUGUGCG--UCGCGCAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 55922 | 0.69 | 0.608714 |
Target: 5'- cAACUGCGUGcGCAgGCGGCGCagAUGa -3' miRNA: 3'- -UUGACGUAC-UGUgCGUCGCGcaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 812 | 0.68 | 0.61982 |
Target: 5'- cGCUGCGcUGcCGCGUGG-GUGUACGGc -3' miRNA: 3'- uUGACGU-ACuGUGCGUCgCGCAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 39332 | 0.68 | 0.630936 |
Target: 5'- -uCUGCGUagcGACACGCAGCG-GcGCGa -3' miRNA: 3'- uuGACGUA---CUGUGCGUCGCgCaUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 56813 | 0.68 | 0.653161 |
Target: 5'- uGGCUGCAc--CGCGCAGCcaGCG-ACGGc -3' miRNA: 3'- -UUGACGUacuGUGCGUCG--CGCaUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 25124 | 0.68 | 0.664249 |
Target: 5'- cGGCUGCAUcGACGCcCGGUGCa-GCGGc -3' miRNA: 3'- -UUGACGUA-CUGUGcGUCGCGcaUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 51587 | 0.67 | 0.675306 |
Target: 5'- ---cGCGUGACggGCGCgcagaAGCGCGgcACGGg -3' miRNA: 3'- uugaCGUACUG--UGCG-----UCGCGCa-UGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 41730 | 0.67 | 0.675306 |
Target: 5'- aAACUgGCGcuGCACGaUGGCGCGUGCGu -3' miRNA: 3'- -UUGA-CGUacUGUGC-GUCGCGCAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 9635 | 0.67 | 0.675306 |
Target: 5'- uGGCUGCc-GACACgGCAGCcucgucacGgGUGCGGg -3' miRNA: 3'- -UUGACGuaCUGUG-CGUCG--------CgCAUGCC- -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 39681 | 0.67 | 0.686322 |
Target: 5'- --aUGCGUcGACACG--GCGCGUACGu -3' miRNA: 3'- uugACGUA-CUGUGCguCGCGCAUGCc -5' |
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22564 | 3' | -54.3 | NC_005091.1 | + | 40016 | 0.67 | 0.686322 |
Target: 5'- gGAgUGCAUGAC-CGCgaAGCGCaagugGUACGa -3' miRNA: 3'- -UUgACGUACUGuGCG--UCGCG-----CAUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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