miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 3' -54.3 NC_005091.1 + 48807 0.78 0.172296
Target:  5'- uAGCUGUGaGACGCGCuGCGCcGUACGGc -3'
miRNA:   3'- -UUGACGUaCUGUGCGuCGCG-CAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 49439 0.66 0.771565
Target:  5'- uGACUGCAuccuuagacguUGaACACGUAGCGC--ACGa -3'
miRNA:   3'- -UUGACGU-----------AC-UGUGCGUCGCGcaUGCc -5'
22564 3' -54.3 NC_005091.1 + 11332 0.66 0.740376
Target:  5'- cGGCUGCcgcguucGACuGCGCAuGUGCGUcACGGa -3'
miRNA:   3'- -UUGACGua-----CUG-UGCGU-CGCGCA-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 57405 0.67 0.719006
Target:  5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3'
miRNA:   3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5'
22564 3' -54.3 NC_005091.1 + 11 0.67 0.719006
Target:  5'- gAAUUGCGcGGuCAUGCAGCGCaUGCGc -3'
miRNA:   3'- -UUGACGUaCU-GUGCGUCGCGcAUGCc -5'
22564 3' -54.3 NC_005091.1 + 52115 0.67 0.708184
Target:  5'- aGGCgGCcgucgccGGCGCGgGGCGCGUuGCGGa -3'
miRNA:   3'- -UUGaCGua-----CUGUGCgUCGCGCA-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 49722 0.67 0.708184
Target:  5'- -uCUGCAUGcgggGCACGuCGGC-CGUGCGu -3'
miRNA:   3'- uuGACGUAC----UGUGC-GUCGcGCAUGCc -5'
22564 3' -54.3 NC_005091.1 + 51587 0.67 0.675306
Target:  5'- ---cGCGUGACggGCGCgcagaAGCGCGgcACGGg -3'
miRNA:   3'- uugaCGUACUG--UGCG-----UCGCGCa-UGCC- -5'
22564 3' -54.3 NC_005091.1 + 25124 0.68 0.664249
Target:  5'- cGGCUGCAUcGACGCcCGGUGCa-GCGGc -3'
miRNA:   3'- -UUGACGUA-CUGUGcGUCGCGcaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 49040 0.74 0.323333
Target:  5'- uGCUGCG-GGCGCGCugcuGCGCaccguGUGCGGg -3'
miRNA:   3'- uUGACGUaCUGUGCGu---CGCG-----CAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 22144 0.73 0.347957
Target:  5'- ---gGCGUGACgcgcccGCGCAGUGCGUACa- -3'
miRNA:   3'- uugaCGUACUG------UGCGUCGCGCAUGcc -5'
22564 3' -54.3 NC_005091.1 + 55922 0.69 0.608714
Target:  5'- cAACUGCGUGcGCAgGCGGCGCagAUGa -3'
miRNA:   3'- -UUGACGUAC-UGUgCGUCGCGcaUGCc -5'
22564 3' -54.3 NC_005091.1 + 812 0.68 0.61982
Target:  5'- cGCUGCGcUGcCGCGUGG-GUGUACGGc -3'
miRNA:   3'- uUGACGU-ACuGUGCGUCgCGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 39332 0.68 0.630936
Target:  5'- -uCUGCGUagcGACACGCAGCG-GcGCGa -3'
miRNA:   3'- uuGACGUA---CUGUGCGUCGCgCaUGCc -5'
22564 3' -54.3 NC_005091.1 + 56813 0.68 0.653161
Target:  5'- uGGCUGCAc--CGCGCAGCcaGCG-ACGGc -3'
miRNA:   3'- -UUGACGUacuGUGCGUCG--CGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 10925 1.09 0.001215
Target:  5'- cAACUGCAUGACACGCAGCGCGUACGGg -3'
miRNA:   3'- -UUGACGUACUGUGCGUCGCGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 51628 0.66 0.771565
Target:  5'- ---cGCAUGGC-CGCGuaucagauacuGCGCGgggGCGGu -3'
miRNA:   3'- uugaCGUACUGuGCGU-----------CGCGCa--UGCC- -5'
22564 3' -54.3 NC_005091.1 + 35571 0.66 0.767476
Target:  5'- uGGCUGCcUGACagcuacuACGUccagcucgucuccgAGCgGCGUACGGa -3'
miRNA:   3'- -UUGACGuACUG-------UGCG--------------UCG-CGCAUGCC- -5'
22564 3' -54.3 NC_005091.1 + 25046 0.66 0.7613
Target:  5'- aGACUGCGaGACugGuCGGCacuGCG-GCGGc -3'
miRNA:   3'- -UUGACGUaCUGugC-GUCG---CGCaUGCC- -5'
22564 3' -54.3 NC_005091.1 + 35084 0.66 0.7613
Target:  5'- --aUGCgGUGAC-UGCGGCcCGUGCGGc -3'
miRNA:   3'- uugACG-UACUGuGCGUCGcGCAUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.