miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 5' -57.6 NC_005091.1 + 4224 0.66 0.562133
Target:  5'- gGCUGuggcagaggaugaAGUGCg--GCGUGCCg-GGCCa -3'
miRNA:   3'- aCGGC-------------UCACGuuaCGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 22846 0.71 0.310658
Target:  5'- aUGCCGAGcGCA---CGCGCCUgaacGCCg -3'
miRNA:   3'- -ACGGCUCaCGUuacGCGCGGAac--CGG- -5'
22564 5' -57.6 NC_005091.1 + 50880 0.72 0.277178
Target:  5'- aUGCaCcAGUGCAAcGCGCGCCgagcguugccaagcUGGCCc -3'
miRNA:   3'- -ACG-GcUCACGUUaCGCGCGGa-------------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 10891 1.12 0.00033
Target:  5'- cUGCCGAGUGCAAUGCGCGCCUUGGCCg -3'
miRNA:   3'- -ACGGCUCACGUUACGCGCGGAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 36516 0.67 0.531307
Target:  5'- cGCCGAuaccGUGCGcAUGgaaGCGCCgugcugcggcGGCCg -3'
miRNA:   3'- aCGGCU----CACGU-UACg--CGCGGaa--------CCGG- -5'
22564 5' -57.6 NC_005091.1 + 50051 0.67 0.510408
Target:  5'- -aUCGAGcGCAAcGCGUGCC--GGCCu -3'
miRNA:   3'- acGGCUCaCGUUaCGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 20000 0.67 0.500087
Target:  5'- cUGCCGuGggcgGCGAUugguucgaGUGCGCCgaGGCg -3'
miRNA:   3'- -ACGGCuCa---CGUUA--------CGCGCGGaaCCGg -5'
22564 5' -57.6 NC_005091.1 + 33646 0.67 0.500087
Target:  5'- aUG-CGAGUGgAucgGCGCGUCgcaaGGCCa -3'
miRNA:   3'- -ACgGCUCACgUua-CGCGCGGaa--CCGG- -5'
22564 5' -57.6 NC_005091.1 + 33572 0.66 0.578271
Target:  5'- aUGCCggccucucgaccuauGAGcGCGAaaucGCGCGCCUcGGCg -3'
miRNA:   3'- -ACGG---------------CUCaCGUUa---CGCGCGGAaCCGg -5'
22564 5' -57.6 NC_005091.1 + 57892 0.7 0.3422
Target:  5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3'
miRNA:   3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 52773 0.69 0.421279
Target:  5'- aGCCGuc-GCAcuggccggcGUGCGCGCCcgucUGGUCg -3'
miRNA:   3'- aCGGCucaCGU---------UACGCGCGGa---ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 46286 0.69 0.421279
Target:  5'- gUGCCaGAGUuCGAgGcCGCGCUcgUGGCCg -3'
miRNA:   3'- -ACGG-CUCAcGUUaC-GCGCGGa-ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 29078 0.67 0.541873
Target:  5'- -aCCGAGUGCAGUucgGCGCggagacGCCUgccccuGCCg -3'
miRNA:   3'- acGGCUCACGUUA---CGCG------CGGAac----CGG- -5'
22564 5' -57.6 NC_005091.1 + 48832 0.7 0.367333
Target:  5'- cUGCCGcGUGUg--GCGUGCCcgcaacgcaUGGCCg -3'
miRNA:   3'- -ACGGCuCACGuuaCGCGCGGa--------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 37128 0.67 0.541873
Target:  5'- gGCCcGGcGCAGUGCGgGaagaCUgaUGGCCu -3'
miRNA:   3'- aCGGcUCaCGUUACGCgCg---GA--ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 10086 0.68 0.430725
Target:  5'- gUGCCGGGUuccaguucgagGCGGUGCagGUGC-UUGGCUg -3'
miRNA:   3'- -ACGGCUCA-----------CGUUACG--CGCGgAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 498 0.7 0.3422
Target:  5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3'
miRNA:   3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 8715 0.71 0.298675
Target:  5'- aUGCCGGGUGC-AUGauCGCCUgaauccccuucacgaUGGCUu -3'
miRNA:   3'- -ACGGCUCACGuUACgcGCGGA---------------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 9271 0.67 0.531307
Target:  5'- cGCCGGcUGCAcgGCGaCGCa--GGCUc -3'
miRNA:   3'- aCGGCUcACGUuaCGC-GCGgaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 18310 0.67 0.500087
Target:  5'- cUGCCGAccucGCGAUGCGCGU---GGCg -3'
miRNA:   3'- -ACGGCUca--CGUUACGCGCGgaaCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.