miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 5' -57.6 NC_005091.1 + 30623 0.74 0.206663
Target:  5'- cGCCGAa-GCAcUGCGUGCCUUGGagacCCg -3'
miRNA:   3'- aCGGCUcaCGUuACGCGCGGAACC----GG- -5'
22564 5' -57.6 NC_005091.1 + 2882 0.67 0.530255
Target:  5'- gGCCGuuUGCGugGUGUGCGaauauguCCUUgcGGCCg -3'
miRNA:   3'- aCGGCucACGU--UACGCGC-------GGAA--CCGG- -5'
22564 5' -57.6 NC_005091.1 + 44191 0.67 0.531307
Target:  5'- cGCCGugcgcgacAGUGCcguAUGCgGCGUCUUcGCCu -3'
miRNA:   3'- aCGGC--------UCACGu--UACG-CGCGGAAcCGG- -5'
22564 5' -57.6 NC_005091.1 + 28710 0.67 0.541873
Target:  5'- cGCCGGG-GCc-UGCGCGCau--GCCa -3'
miRNA:   3'- aCGGCUCaCGuuACGCGCGgaacCGG- -5'
22564 5' -57.6 NC_005091.1 + 19465 0.66 0.563206
Target:  5'- cGCCGAacacgacgGCcuGcgGCGUGCCcuccgUGGCCu -3'
miRNA:   3'- aCGGCUca------CG--UuaCGCGCGGa----ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 6441 0.66 0.573957
Target:  5'- -cCCGAGgGCAgcGUGCGCGCUgc-GCUg -3'
miRNA:   3'- acGGCUCaCGU--UACGCGCGGaacCGG- -5'
22564 5' -57.6 NC_005091.1 + 25870 0.66 0.573957
Target:  5'- aUGCCGAG-GCGuucgGCuuGCGCCUgcacguauUGGUa -3'
miRNA:   3'- -ACGGCUCaCGUua--CG--CGCGGA--------ACCGg -5'
22564 5' -57.6 NC_005091.1 + 26414 0.66 0.583674
Target:  5'- aGCCGcAGccUGCGuugccUGCGCcuguugauucaucGCCUUGGCg -3'
miRNA:   3'- aCGGC-UC--ACGUu----ACGCG-------------CGGAACCGg -5'
22564 5' -57.6 NC_005091.1 + 44765 0.66 0.595593
Target:  5'- uUGCCGGccGCcGUGgucguugccuuCGUGCCUUcGGCCg -3'
miRNA:   3'- -ACGGCUcaCGuUAC-----------GCGCGGAA-CCGG- -5'
22564 5' -57.6 NC_005091.1 + 47883 0.67 0.520817
Target:  5'- cGCCGGGUGCGGUuuGUaGCCg-GGUCc -3'
miRNA:   3'- aCGGCUCACGUUAcgCG-CGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 26895 0.68 0.430725
Target:  5'- uUGCCGAGacuguccgucccUGCGGuUGCG-GCCUUcGCCu -3'
miRNA:   3'- -ACGGCUC------------ACGUU-ACGCgCGGAAcCGG- -5'
22564 5' -57.6 NC_005091.1 + 55997 0.72 0.274407
Target:  5'- uUGCCGAa-GUAaucAUGCGCGCC--GGCCg -3'
miRNA:   3'- -ACGGCUcaCGU---UACGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 31687 0.71 0.295735
Target:  5'- aGaCCGGGUGCGAUaccguaGcCGCGCC--GGCCg -3'
miRNA:   3'- aC-GGCUCACGUUA------C-GCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 44725 0.7 0.3325
Target:  5'- gGCCGAGUGCuucggcuucguUGC-UGCCUUGccGCCg -3'
miRNA:   3'- aCGGCUCACGuu---------ACGcGCGGAAC--CGG- -5'
22564 5' -57.6 NC_005091.1 + 40557 0.7 0.3422
Target:  5'- cGCCGAGUcgGUAuccCGCGCCgagcacGGCCg -3'
miRNA:   3'- aCGGCUCA--CGUuacGCGCGGaa----CCGG- -5'
22564 5' -57.6 NC_005091.1 + 798 0.7 0.350438
Target:  5'- aUGCCGAucucGUGCGcUGCGCuGCCgcgUGGgUg -3'
miRNA:   3'- -ACGGCU----CACGUuACGCG-CGGa--ACCgG- -5'
22564 5' -57.6 NC_005091.1 + 51957 0.7 0.364764
Target:  5'- aGCCGAGUGCGcuacggccuucgauAUGCGUccgguagcucGCgaUGGUCg -3'
miRNA:   3'- aCGGCUCACGU--------------UACGCG----------CGgaACCGG- -5'
22564 5' -57.6 NC_005091.1 + 40972 0.69 0.384781
Target:  5'- cGCUGcGUGCGcUGCGCGCCU---CCg -3'
miRNA:   3'- aCGGCuCACGUuACGCGCGGAaccGG- -5'
22564 5' -57.6 NC_005091.1 + 24792 0.69 0.421279
Target:  5'- gGCCGAGgaauuccGCcGUGCuGCGCa--GGCCg -3'
miRNA:   3'- aCGGCUCa------CGuUACG-CGCGgaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 10891 1.12 0.00033
Target:  5'- cUGCCGAGUGCAAUGCGCGCCUUGGCCg -3'
miRNA:   3'- -ACGGCUCACGUUACGCGCGGAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.