Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22564 | 5' | -57.6 | NC_005091.1 | + | 52773 | 0.69 | 0.421279 |
Target: 5'- aGCCGuc-GCAcuggccggcGUGCGCGCCcgucUGGUCg -3' miRNA: 3'- aCGGCucaCGU---------UACGCGCGGa---ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 48832 | 0.7 | 0.367333 |
Target: 5'- cUGCCGcGUGUg--GCGUGCCcgcaacgcaUGGCCg -3' miRNA: 3'- -ACGGCuCACGuuaCGCGCGGa--------ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 498 | 0.7 | 0.3422 |
Target: 5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3' miRNA: 3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 57892 | 0.7 | 0.3422 |
Target: 5'- cGCCGucgcGUGCGugagaaccGCGCGCucuccccgccgCUUGGCCg -3' miRNA: 3'- aCGGCu---CACGUua------CGCGCG-----------GAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 22846 | 0.71 | 0.310658 |
Target: 5'- aUGCCGAGcGCA---CGCGCCUgaacGCCg -3' miRNA: 3'- -ACGGCUCaCGUuacGCGCGGAac--CGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 8715 | 0.71 | 0.298675 |
Target: 5'- aUGCCGGGUGC-AUGauCGCCUgaauccccuucacgaUGGCUu -3' miRNA: 3'- -ACGGCUCACGuUACgcGCGGA---------------ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 50880 | 0.72 | 0.277178 |
Target: 5'- aUGCaCcAGUGCAAcGCGCGCCgagcguugccaagcUGGCCc -3' miRNA: 3'- -ACG-GcUCACGUUaCGCGCGGa-------------ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 28888 | 0.72 | 0.247909 |
Target: 5'- gGCgGAcGUGCAG-GUGCGCCUcGGCg -3' miRNA: 3'- aCGgCU-CACGUUaCGCGCGGAaCCGg -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 48791 | 0.73 | 0.21217 |
Target: 5'- gUGUCGcucGUGCAGUGC-CGCaUUGGCCg -3' miRNA: 3'- -ACGGCu--CACGUUACGcGCGgAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 34546 | 0.74 | 0.19602 |
Target: 5'- cUGCCGAGUGgGAccGCGCGgCgaaccGGCCg -3' miRNA: 3'- -ACGGCUCACgUUa-CGCGCgGaa---CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 10891 | 1.12 | 0.00033 |
Target: 5'- cUGCCGAGUGCAAUGCGCGCCUUGGCCg -3' miRNA: 3'- -ACGGCUCACGUUACGCGCGGAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 10086 | 0.68 | 0.430725 |
Target: 5'- gUGCCGGGUuccaguucgagGCGGUGCagGUGC-UUGGCUg -3' miRNA: 3'- -ACGGCUCA-----------CGUUACG--CGCGgAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 33646 | 0.67 | 0.500087 |
Target: 5'- aUG-CGAGUGgAucgGCGCGUCgcaaGGCCa -3' miRNA: 3'- -ACgGCUCACgUua-CGCGCGGaa--CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 20000 | 0.67 | 0.500087 |
Target: 5'- cUGCCGuGggcgGCGAUugguucgaGUGCGCCgaGGCg -3' miRNA: 3'- -ACGGCuCa---CGUUA--------CGCGCGGaaCCGg -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 18310 | 0.67 | 0.500087 |
Target: 5'- cUGCCGAccucGCGAUGCGCGU---GGCg -3' miRNA: 3'- -ACGGCUca--CGUUACGCGCGgaaCCGg -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 50051 | 0.67 | 0.510408 |
Target: 5'- -aUCGAGcGCAAcGCGUGCC--GGCCu -3' miRNA: 3'- acGGCUCaCGUUaCGCGCGGaaCCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 36516 | 0.67 | 0.531307 |
Target: 5'- cGCCGAuaccGUGCGcAUGgaaGCGCCgugcugcggcGGCCg -3' miRNA: 3'- aCGGCU----CACGU-UACg--CGCGGaa--------CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 9271 | 0.67 | 0.531307 |
Target: 5'- cGCCGGcUGCAcgGCGaCGCa--GGCUc -3' miRNA: 3'- aCGGCUcACGUuaCGC-GCGgaaCCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 37128 | 0.67 | 0.541873 |
Target: 5'- gGCCcGGcGCAGUGCGgGaagaCUgaUGGCCu -3' miRNA: 3'- aCGGcUCaCGUUACGCgCg---GA--ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 29078 | 0.67 | 0.541873 |
Target: 5'- -aCCGAGUGCAGUucgGCGCggagacGCCUgccccuGCCg -3' miRNA: 3'- acGGCUCACGUUA---CGCG------CGGAac----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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