miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22564 5' -57.6 NC_005091.1 + 29078 0.67 0.541873
Target:  5'- -aCCGAGUGCAGUucgGCGCggagacGCCUgccccuGCCg -3'
miRNA:   3'- acGGCUCACGUUA---CGCG------CGGAac----CGG- -5'
22564 5' -57.6 NC_005091.1 + 30623 0.74 0.206663
Target:  5'- cGCCGAa-GCAcUGCGUGCCUUGGagacCCg -3'
miRNA:   3'- aCGGCUcaCGUuACGCGCGGAACC----GG- -5'
22564 5' -57.6 NC_005091.1 + 31687 0.71 0.295735
Target:  5'- aGaCCGGGUGCGAUaccguaGcCGCGCC--GGCCg -3'
miRNA:   3'- aC-GGCUCACGUUA------C-GCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 33572 0.66 0.578271
Target:  5'- aUGCCggccucucgaccuauGAGcGCGAaaucGCGCGCCUcGGCg -3'
miRNA:   3'- -ACGG---------------CUCaCGUUa---CGCGCGGAaCCGg -5'
22564 5' -57.6 NC_005091.1 + 33646 0.67 0.500087
Target:  5'- aUG-CGAGUGgAucgGCGCGUCgcaaGGCCa -3'
miRNA:   3'- -ACgGCUCACgUua-CGCGCGGaa--CCGG- -5'
22564 5' -57.6 NC_005091.1 + 34546 0.74 0.19602
Target:  5'- cUGCCGAGUGgGAccGCGCGgCgaaccGGCCg -3'
miRNA:   3'- -ACGGCUCACgUUa-CGCGCgGaa---CCGG- -5'
22564 5' -57.6 NC_005091.1 + 36516 0.67 0.531307
Target:  5'- cGCCGAuaccGUGCGcAUGgaaGCGCCgugcugcggcGGCCg -3'
miRNA:   3'- aCGGCU----CACGU-UACg--CGCGGaa--------CCGG- -5'
22564 5' -57.6 NC_005091.1 + 37128 0.67 0.541873
Target:  5'- gGCCcGGcGCAGUGCGgGaagaCUgaUGGCCu -3'
miRNA:   3'- aCGGcUCaCGUUACGCgCg---GA--ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 40557 0.7 0.3422
Target:  5'- cGCCGAGUcgGUAuccCGCGCCgagcacGGCCg -3'
miRNA:   3'- aCGGCUCA--CGUuacGCGCGGaa----CCGG- -5'
22564 5' -57.6 NC_005091.1 + 40972 0.69 0.384781
Target:  5'- cGCUGcGUGCGcUGCGCGCCU---CCg -3'
miRNA:   3'- aCGGCuCACGUuACGCGCGGAaccGG- -5'
22564 5' -57.6 NC_005091.1 + 44191 0.67 0.531307
Target:  5'- cGCCGugcgcgacAGUGCcguAUGCgGCGUCUUcGCCu -3'
miRNA:   3'- aCGGC--------UCACGu--UACG-CGCGGAAcCGG- -5'
22564 5' -57.6 NC_005091.1 + 44725 0.7 0.3325
Target:  5'- gGCCGAGUGCuucggcuucguUGC-UGCCUUGccGCCg -3'
miRNA:   3'- aCGGCUCACGuu---------ACGcGCGGAAC--CGG- -5'
22564 5' -57.6 NC_005091.1 + 44765 0.66 0.595593
Target:  5'- uUGCCGGccGCcGUGgucguugccuuCGUGCCUUcGGCCg -3'
miRNA:   3'- -ACGGCUcaCGuUAC-----------GCGCGGAA-CCGG- -5'
22564 5' -57.6 NC_005091.1 + 46286 0.69 0.421279
Target:  5'- gUGCCaGAGUuCGAgGcCGCGCUcgUGGCCg -3'
miRNA:   3'- -ACGG-CUCAcGUUaC-GCGCGGa-ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 47883 0.67 0.520817
Target:  5'- cGCCGGGUGCGGUuuGUaGCCg-GGUCc -3'
miRNA:   3'- aCGGCUCACGUUAcgCG-CGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 48791 0.73 0.21217
Target:  5'- gUGUCGcucGUGCAGUGC-CGCaUUGGCCg -3'
miRNA:   3'- -ACGGCu--CACGUUACGcGCGgAACCGG- -5'
22564 5' -57.6 NC_005091.1 + 48832 0.7 0.367333
Target:  5'- cUGCCGcGUGUg--GCGUGCCcgcaacgcaUGGCCg -3'
miRNA:   3'- -ACGGCuCACGuuaCGCGCGGa--------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 50051 0.67 0.510408
Target:  5'- -aUCGAGcGCAAcGCGUGCC--GGCCu -3'
miRNA:   3'- acGGCUCaCGUUaCGCGCGGaaCCGG- -5'
22564 5' -57.6 NC_005091.1 + 50880 0.72 0.277178
Target:  5'- aUGCaCcAGUGCAAcGCGCGCCgagcguugccaagcUGGCCc -3'
miRNA:   3'- -ACG-GcUCACGUUaCGCGCGGa-------------ACCGG- -5'
22564 5' -57.6 NC_005091.1 + 51957 0.7 0.364764
Target:  5'- aGCCGAGUGCGcuacggccuucgauAUGCGUccgguagcucGCgaUGGUCg -3'
miRNA:   3'- aCGGCUCACGU--------------UACGCG----------CGgaACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.