Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22564 | 5' | -57.6 | NC_005091.1 | + | 29078 | 0.67 | 0.541873 |
Target: 5'- -aCCGAGUGCAGUucgGCGCggagacGCCUgccccuGCCg -3' miRNA: 3'- acGGCUCACGUUA---CGCG------CGGAac----CGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 30623 | 0.74 | 0.206663 |
Target: 5'- cGCCGAa-GCAcUGCGUGCCUUGGagacCCg -3' miRNA: 3'- aCGGCUcaCGUuACGCGCGGAACC----GG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 31687 | 0.71 | 0.295735 |
Target: 5'- aGaCCGGGUGCGAUaccguaGcCGCGCC--GGCCg -3' miRNA: 3'- aC-GGCUCACGUUA------C-GCGCGGaaCCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 33572 | 0.66 | 0.578271 |
Target: 5'- aUGCCggccucucgaccuauGAGcGCGAaaucGCGCGCCUcGGCg -3' miRNA: 3'- -ACGG---------------CUCaCGUUa---CGCGCGGAaCCGg -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 33646 | 0.67 | 0.500087 |
Target: 5'- aUG-CGAGUGgAucgGCGCGUCgcaaGGCCa -3' miRNA: 3'- -ACgGCUCACgUua-CGCGCGGaa--CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 34546 | 0.74 | 0.19602 |
Target: 5'- cUGCCGAGUGgGAccGCGCGgCgaaccGGCCg -3' miRNA: 3'- -ACGGCUCACgUUa-CGCGCgGaa---CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 36516 | 0.67 | 0.531307 |
Target: 5'- cGCCGAuaccGUGCGcAUGgaaGCGCCgugcugcggcGGCCg -3' miRNA: 3'- aCGGCU----CACGU-UACg--CGCGGaa--------CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 37128 | 0.67 | 0.541873 |
Target: 5'- gGCCcGGcGCAGUGCGgGaagaCUgaUGGCCu -3' miRNA: 3'- aCGGcUCaCGUUACGCgCg---GA--ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 40557 | 0.7 | 0.3422 |
Target: 5'- cGCCGAGUcgGUAuccCGCGCCgagcacGGCCg -3' miRNA: 3'- aCGGCUCA--CGUuacGCGCGGaa----CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 40972 | 0.69 | 0.384781 |
Target: 5'- cGCUGcGUGCGcUGCGCGCCU---CCg -3' miRNA: 3'- aCGGCuCACGUuACGCGCGGAaccGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 44191 | 0.67 | 0.531307 |
Target: 5'- cGCCGugcgcgacAGUGCcguAUGCgGCGUCUUcGCCu -3' miRNA: 3'- aCGGC--------UCACGu--UACG-CGCGGAAcCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 44725 | 0.7 | 0.3325 |
Target: 5'- gGCCGAGUGCuucggcuucguUGC-UGCCUUGccGCCg -3' miRNA: 3'- aCGGCUCACGuu---------ACGcGCGGAAC--CGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 44765 | 0.66 | 0.595593 |
Target: 5'- uUGCCGGccGCcGUGgucguugccuuCGUGCCUUcGGCCg -3' miRNA: 3'- -ACGGCUcaCGuUAC-----------GCGCGGAA-CCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 46286 | 0.69 | 0.421279 |
Target: 5'- gUGCCaGAGUuCGAgGcCGCGCUcgUGGCCg -3' miRNA: 3'- -ACGG-CUCAcGUUaC-GCGCGGa-ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 47883 | 0.67 | 0.520817 |
Target: 5'- cGCCGGGUGCGGUuuGUaGCCg-GGUCc -3' miRNA: 3'- aCGGCUCACGUUAcgCG-CGGaaCCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 48791 | 0.73 | 0.21217 |
Target: 5'- gUGUCGcucGUGCAGUGC-CGCaUUGGCCg -3' miRNA: 3'- -ACGGCu--CACGUUACGcGCGgAACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 48832 | 0.7 | 0.367333 |
Target: 5'- cUGCCGcGUGUg--GCGUGCCcgcaacgcaUGGCCg -3' miRNA: 3'- -ACGGCuCACGuuaCGCGCGGa--------ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 50051 | 0.67 | 0.510408 |
Target: 5'- -aUCGAGcGCAAcGCGUGCC--GGCCu -3' miRNA: 3'- acGGCUCaCGUUaCGCGCGGaaCCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 50880 | 0.72 | 0.277178 |
Target: 5'- aUGCaCcAGUGCAAcGCGCGCCgagcguugccaagcUGGCCc -3' miRNA: 3'- -ACG-GcUCACGUUaCGCGCGGa-------------ACCGG- -5' |
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22564 | 5' | -57.6 | NC_005091.1 | + | 51957 | 0.7 | 0.364764 |
Target: 5'- aGCCGAGUGCGcuacggccuucgauAUGCGUccgguagcucGCgaUGGUCg -3' miRNA: 3'- aCGGCUCACGU--------------UACGCG----------CGgaACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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