miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 3' -56.2 NC_005091.1 + 13596 1.12 0.000784
Target:  5'- cCCGGCGUCGAGCAGCGACGUGAACGGu -3'
miRNA:   3'- -GGCCGCAGCUCGUCGCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 16524 0.85 0.056715
Target:  5'- cCCGGCGUCGAGCauGGCGACGcUGu-CGGa -3'
miRNA:   3'- -GGCCGCAGCUCG--UCGCUGC-ACuuGCC- -5'
22566 3' -56.2 NC_005091.1 + 18164 0.76 0.243046
Target:  5'- cCCGGCGaUCGAGC-GUGAgCGUGAACc- -3'
miRNA:   3'- -GGCCGC-AGCUCGuCGCU-GCACUUGcc -5'
22566 3' -56.2 NC_005091.1 + 6983 0.75 0.281962
Target:  5'- cCCGGCGucaUCGAGCugcuGGCGGaaggcaagGUGAGCGGc -3'
miRNA:   3'- -GGCCGC---AGCUCG----UCGCUg-------CACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 29473 0.74 0.288909
Target:  5'- uUCGGCGaacCGGGCgAGCGACGUaGGACGc -3'
miRNA:   3'- -GGCCGCa--GCUCG-UCGCUGCA-CUUGCc -5'
22566 3' -56.2 NC_005091.1 + 22919 0.74 0.318038
Target:  5'- aUGGCGgcCGAGCAGCGGCGUucgcucCGGa -3'
miRNA:   3'- gGCCGCa-GCUCGUCGCUGCAcuu---GCC- -5'
22566 3' -56.2 NC_005091.1 + 51800 0.73 0.349321
Target:  5'- cCCGGCGUcCGGGCGuGCGGCuugcgcgcgauuGUGuACGGc -3'
miRNA:   3'- -GGCCGCA-GCUCGU-CGCUG------------CACuUGCC- -5'
22566 3' -56.2 NC_005091.1 + 1072 0.71 0.43668
Target:  5'- gCCcGCGUCGAGCAGguccuGCG-GGACGGa -3'
miRNA:   3'- -GGcCGCAGCUCGUCgc---UGCaCUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 30294 0.71 0.446089
Target:  5'- gUCGGUGaaaUCGAacggcuugcccGguGCGGCGUGAACGa -3'
miRNA:   3'- -GGCCGC---AGCU-----------CguCGCUGCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 57837 0.71 0.446089
Target:  5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3'
miRNA:   3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 443 0.71 0.446089
Target:  5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3'
miRNA:   3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 25200 0.71 0.455611
Target:  5'- aCCGGgGUCGAuGCAGCcggcGCGUcGAUGGc -3'
miRNA:   3'- -GGCCgCAGCU-CGUCGc---UGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 50742 0.71 0.465242
Target:  5'- aCGGCGUCGAauauCuGCGGCacGAGCGGa -3'
miRNA:   3'- gGCCGCAGCUc---GuCGCUGcaCUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 24027 0.71 0.465242
Target:  5'- cCCGGCaUCu-GCGGCGGCGaaGGGCGGu -3'
miRNA:   3'- -GGCCGcAGcuCGUCGCUGCa-CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 48446 0.7 0.484812
Target:  5'- uUCGGgGaaGGGCAGCGGCGcuauGACGGa -3'
miRNA:   3'- -GGCCgCagCUCGUCGCUGCac--UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 7200 0.7 0.484812
Target:  5'- aUGGCGgCGAGCAGCGAgCGgccGACGu -3'
miRNA:   3'- gGCCGCaGCUCGUCGCU-GCac-UUGCc -5'
22566 3' -56.2 NC_005091.1 + 57270 0.7 0.525069
Target:  5'- cCCGGCGUCG-GCAGgaggaccaCGGCaUGAGCa- -3'
miRNA:   3'- -GGCCGCAGCuCGUC--------GCUGcACUUGcc -5'
22566 3' -56.2 NC_005091.1 + 19528 0.69 0.545672
Target:  5'- uUCGGCGaUUGcugguGCAGCGAU-UGGACGGu -3'
miRNA:   3'- -GGCCGC-AGCu----CGUCGCUGcACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 50812 0.69 0.545672
Target:  5'- gCGGcCGUCGuGCGcGCGGCuauccgGAGCGGu -3'
miRNA:   3'- gGCC-GCAGCuCGU-CGCUGca----CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 32208 0.69 0.556072
Target:  5'- gCGGCGgcagCGAGCAucaccuucGCGuCGUcAACGGa -3'
miRNA:   3'- gGCCGCa---GCUCGU--------CGCuGCAcUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.