miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 3' -56.2 NC_005091.1 + 443 0.71 0.446089
Target:  5'- aCGGCGUCGAcgGUAGCGAcauugcCGUuGAUGGu -3'
miRNA:   3'- gGCCGCAGCU--CGUCGCU------GCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 1072 0.71 0.43668
Target:  5'- gCCcGCGUCGAGCAGguccuGCG-GGACGGa -3'
miRNA:   3'- -GGcCGCAGCUCGUCgc---UGCaCUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 5323 0.67 0.672531
Target:  5'- aCGGcCGUgCGGcCAGUGAUGUGAucCGGg -3'
miRNA:   3'- gGCC-GCA-GCUcGUCGCUGCACUu-GCC- -5'
22566 3' -56.2 NC_005091.1 + 6173 0.67 0.66194
Target:  5'- gCgGGCGaCGAGCcgaAGCGGCGcGAcaguCGGa -3'
miRNA:   3'- -GgCCGCaGCUCG---UCGCUGCaCUu---GCC- -5'
22566 3' -56.2 NC_005091.1 + 6615 0.67 0.672531
Target:  5'- gCGGCGUcCGGGCuGCcGGCGUucaugcccGAGCGc -3'
miRNA:   3'- gGCCGCA-GCUCGuCG-CUGCA--------CUUGCc -5'
22566 3' -56.2 NC_005091.1 + 6983 0.75 0.281962
Target:  5'- cCCGGCGucaUCGAGCugcuGGCGGaaggcaagGUGAGCGGc -3'
miRNA:   3'- -GGCCGC---AGCUCG----UCGCUg-------CACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 7200 0.7 0.484812
Target:  5'- aUGGCGgCGAGCAGCGAgCGgccGACGu -3'
miRNA:   3'- gGCCGCaGCUCGUCGCU-GCac-UUGCc -5'
22566 3' -56.2 NC_005091.1 + 7900 0.67 0.683087
Target:  5'- aUCGGCuuGUCGuAGCcucGCGACGguucGAugGGu -3'
miRNA:   3'- -GGCCG--CAGC-UCGu--CGCUGCa---CUugCC- -5'
22566 3' -56.2 NC_005091.1 + 13596 1.12 0.000784
Target:  5'- cCCGGCGUCGAGCAGCGACGUGAACGGu -3'
miRNA:   3'- -GGCCGCAGCUCGUCGCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 14436 0.69 0.577034
Target:  5'- aCCGGCGUCGGGaAGUugaACGUGAAg-- -3'
miRNA:   3'- -GGCCGCAGCUCgUCGc--UGCACUUgcc -5'
22566 3' -56.2 NC_005091.1 + 14597 0.66 0.724757
Target:  5'- cCCGGCaUCGAGCGGC-ACGcuuacCGGc -3'
miRNA:   3'- -GGCCGcAGCUCGUCGcUGCacuu-GCC- -5'
22566 3' -56.2 NC_005091.1 + 16307 0.66 0.756135
Target:  5'- gCCGGCGgccucgucccugaucCGGGC-GCGACG---GCGGg -3'
miRNA:   3'- -GGCCGCa--------------GCUCGuCGCUGCacuUGCC- -5'
22566 3' -56.2 NC_005091.1 + 16524 0.85 0.056715
Target:  5'- cCCGGCGUCGAGCauGGCGACGcUGu-CGGa -3'
miRNA:   3'- -GGCCGCAGCUCG--UCGCUGC-ACuuGCC- -5'
22566 3' -56.2 NC_005091.1 + 16975 0.68 0.640687
Target:  5'- aCgGaGCGUCGGGCugGGgGACGaccacGAACGGc -3'
miRNA:   3'- -GgC-CGCAGCUCG--UCgCUGCa----CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 17000 0.66 0.765046
Target:  5'- cUCGGCGUCuGGUGG-GGC-UGGGCGGn -3'
miRNA:   3'- -GGCCGCAGcUCGUCgCUGcACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 18164 0.76 0.243046
Target:  5'- cCCGGCGaUCGAGC-GUGAgCGUGAACc- -3'
miRNA:   3'- -GGCCGC-AGCUCGuCGCU-GCACUUGcc -5'
22566 3' -56.2 NC_005091.1 + 19528 0.69 0.545672
Target:  5'- uUCGGCGaUUGcugguGCAGCGAU-UGGACGGu -3'
miRNA:   3'- -GGCCGC-AGCu----CGUCGCUGcACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 20012 0.66 0.755139
Target:  5'- aCGGCGUuaucacugccgUGGGCGGCGAUugguucgaGUGcgccgaGGCGGg -3'
miRNA:   3'- gGCCGCA-----------GCUCGUCGCUG--------CAC------UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 20211 0.67 0.683087
Target:  5'- cCCGGacaCGaAGCGgacGUGGCGUGGAUGGg -3'
miRNA:   3'- -GGCCgcaGC-UCGU---CGCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 20356 0.66 0.755139
Target:  5'- aCGGCGgcuacUCGcaaAGCGGCGACGcGu-CGGc -3'
miRNA:   3'- gGCCGC-----AGC---UCGUCGCUGCaCuuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.