miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 3' -56.2 NC_005091.1 + 21586 0.66 0.734985
Target:  5'- gCGGCa--GAGCAcgcuuGCGGCGaUGAACGa -3'
miRNA:   3'- gGCCGcagCUCGU-----CGCUGC-ACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 22919 0.74 0.318038
Target:  5'- aUGGCGgcCGAGCAGCGGCGUucgcucCGGa -3'
miRNA:   3'- gGCCGCa-GCUCGUCGCUGCAcuu---GCC- -5'
22566 3' -56.2 NC_005091.1 + 24027 0.71 0.465242
Target:  5'- cCCGGCaUCu-GCGGCGGCGaaGGGCGGu -3'
miRNA:   3'- -GGCCGcAGcuCGUCGCUGCa-CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 25200 0.71 0.455611
Target:  5'- aCCGGgGUCGAuGCAGCcggcGCGUcGAUGGc -3'
miRNA:   3'- -GGCCgCAGCU-CGUCGc---UGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 26666 0.67 0.672531
Target:  5'- cCCGGCGUUGAGC-GCaucacGCGcGAACa- -3'
miRNA:   3'- -GGCCGCAGCUCGuCGc----UGCaCUUGcc -5'
22566 3' -56.2 NC_005091.1 + 29473 0.74 0.288909
Target:  5'- uUCGGCGaacCGGGCgAGCGACGUaGGACGc -3'
miRNA:   3'- -GGCCGCa--GCUCG-UCGCUGCA-CUUGCc -5'
22566 3' -56.2 NC_005091.1 + 30294 0.71 0.446089
Target:  5'- gUCGGUGaaaUCGAacggcuugcccGguGCGGCGUGAACGa -3'
miRNA:   3'- -GGCCGC---AGCU-----------CguCGCUGCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 31095 0.66 0.711334
Target:  5'- uCCGGCGcUcaccgugcaacugaCGGGCGGCGcaGCGUGGGaucaGGc -3'
miRNA:   3'- -GGCCGC-A--------------GCUCGUCGC--UGCACUUg---CC- -5'
22566 3' -56.2 NC_005091.1 + 31539 0.66 0.724757
Target:  5'- gCUGGCGcUCGuuaCAGCGACGagcguGCGGu -3'
miRNA:   3'- -GGCCGC-AGCuc-GUCGCUGCacu--UGCC- -5'
22566 3' -56.2 NC_005091.1 + 32208 0.69 0.556072
Target:  5'- gCGGCGgcagCGAGCAucaccuucGCGuCGUcAACGGa -3'
miRNA:   3'- gGCCGCa---GCUCGU--------CGCuGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 32781 0.66 0.733966
Target:  5'- -gGGCGUCGAgaccaccuucguuGCGGCGgaagcgaugGCGUaGGCGGc -3'
miRNA:   3'- ggCCGCAGCU-------------CGUCGC---------UGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 34962 0.67 0.700923
Target:  5'- gUCGGCuUCGcuuGGCGGCGGCG-GAcuugaaggcgcgucGCGGc -3'
miRNA:   3'- -GGCCGcAGC---UCGUCGCUGCaCU--------------UGCC- -5'
22566 3' -56.2 NC_005091.1 + 36346 0.68 0.630046
Target:  5'- aUGGCGUCGuGGCGGCGuucaucuCGUG-GCGc -3'
miRNA:   3'- gGCCGCAGC-UCGUCGCu------GCACuUGCc -5'
22566 3' -56.2 NC_005091.1 + 37081 0.67 0.704054
Target:  5'- uCC-GCGUCGaAGuCAcGgGACGUGAGCGu -3'
miRNA:   3'- -GGcCGCAGC-UC-GU-CgCUGCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 38888 0.67 0.692549
Target:  5'- gCCGGCGUCGcGGUgagaagaugcaGGCGcuugauuACGggcGAACGGu -3'
miRNA:   3'- -GGCCGCAGC-UCG-----------UCGC-------UGCa--CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 43602 0.67 0.704054
Target:  5'- aCGGCaUCcuuuGuCGGaCGGCGUGAGCGGc -3'
miRNA:   3'- gGCCGcAGcu--C-GUC-GCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 44636 0.67 0.668298
Target:  5'- -aGGCGcucgaagaagacgCGGGCGGCGACGaagGcGACGGc -3'
miRNA:   3'- ggCCGCa------------GCUCGUCGCUGCa--C-UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 44884 0.69 0.587583
Target:  5'- -aGGCGguaCGGGCGGCGGCaa-GGCGGc -3'
miRNA:   3'- ggCCGCa--GCUCGUCGCUGcacUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 48446 0.7 0.484812
Target:  5'- uUCGGgGaaGGGCAGCGGCGcuauGACGGa -3'
miRNA:   3'- -GGCCgCagCUCGUCGCUGCac--UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 50742 0.71 0.465242
Target:  5'- aCGGCGUCGAauauCuGCGGCacGAGCGGa -3'
miRNA:   3'- gGCCGCAGCUc---GuCGCUGcaCUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.